Non-Coding RNA Search

rtes09_k22.y1

Sequence:


               
               TGATTCAGTACTGGTGGAGAACAGTCACATGGAGGCAGTTGGATAAGCGACGGCAGAACT
CATTGAAGATCTATGTAATCCAGGAGCATGCAGCAGTCAAGCTCCAGTCGTGGGTTCGCA
TGTGGCAGTGCCTTCAACATTACTGCCAAGTATGCAATGCTATCTGCATACTTCAAGCTC
CAAAGAGCTGCTTCACCTTCCAGACCAGTGATGTTTCACCGGCCCAATATGAAGGCACTT
ACAACCAGCCAGAGTTCCATATTGAAATCCTATCAGTCTAAGAGTGCTATAGGGTGGAGA
ACTGGCTCCACCACCCCAATAAATGTCTGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATTCAGTACTGGTGGAGAACAGTCACATGGAGGCAGTTGGATAAGCGACGGCAGAACT
CATTGAAGATCTATGTAATCCAGGAGCATGCAGCAGTCAAGCTCCAGTCGTGGGTTCGCA
TGTGGCAGTGCCTTCAACATTACTGCCAAGTATGCAATGCTATCTGCATACTTCAAGCTC
CAAAGAGCTGCTTCACCTTCCAGACCAGTGATGTTTCACCGGCCCAATATGAAGGCACTT
ACAACCAGCCAGAGTTCCATATTGAAATCCTATCAGTCTAAGAGTGCTATAGGGTGGAGA
ACTGGCTCCACCACCCCAATAAATGTCTGACC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-187, - strand, RNAz p=0.508768
               

               
               94-201, - strand, RNAz p=0.689961

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-187, - strand, RNAz p=0.508768
               

               
               94-201, - strand, RNAz p=0.689961

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-332, gnl|bosTau2|chr5 (57991719-57992052)
               

               
               1-332, gnl|canFam2|chr20 (40844421-40844117)
               

               
               1-332, gnl|dasNov1|scaffold_170794 (615-320)
               

               
               1-332, gnl|echTel1|scaffold_242109 (903-608)
               

               
               1-332, gnl|hg17|chr3 (51839551-51839846)
               

               
               1-332, gnl|Hg17|chr3 (51839577-51839908)
               

               
               1-332, gnl|loxAfr1|scaffold_531 (184913-184618)
               

               
               1-332, gnl|mm7|chr9 (106273207-106272900)
               

               
               1-332, gnl|Mm7|chr9 (106273179-106272837)
               

               
               1-332, gnl|oryCun1|scaffold_96908 (7673-7968)
               

               
               1-332, gnl|panTro1|chr2 (53447702-53447996)
               

               
               1-332, gnl|rheMac2|chr2 (84581492-84581197)
               

               
               1-332, gnl|rn3|chr8 (111712691-111712396)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-332, gnl|bosTau2|chr5 (57991719-57992052)
               

               
               1-332, gnl|canFam2|chr20 (40844421-40844117)
               

               
               1-332, gnl|dasNov1|scaffold_170794 (615-320)
               

               
               1-332, gnl|echTel1|scaffold_242109 (903-608)
               

               
               1-332, gnl|hg17|chr3 (51839551-51839846)
               

               
               1-332, gnl|Hg17|chr3 (51839577-51839908)
               

               
               1-332, gnl|loxAfr1|scaffold_531 (184913-184618)
               

               
               1-332, gnl|mm7|chr9 (106273207-106272900)
               

               
               1-332, gnl|Mm7|chr9 (106273179-106272837)
               

               
               1-332, gnl|oryCun1|scaffold_96908 (7673-7968)
               

               
               1-332, gnl|panTro1|chr2 (53447702-53447996)
               

               
               1-332, gnl|rheMac2|chr2 (84581492-84581197)
               

               
               1-332, gnl|rn3|chr8 (111712691-111712396)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	80-187, - strand, RNAz p=0.508768
	94-201, - strand, RNAz p=0.689961

	1-332, gnl\|bosTau2\|chr5 (57991719-57992052)
	1-332, gnl\|canFam2\|chr20 (40844421-40844117)
	1-332, gnl\|dasNov1\|scaffold_170794 (615-320)
	1-332, gnl\|echTel1\|scaffold_242109 (903-608)
	1-332, gnl\|hg17\|chr3 (51839551-51839846)
	1-332, gnl\|Hg17\|chr3 (51839577-51839908)
	1-332, gnl\|loxAfr1\|scaffold_531 (184913-184618)
	1-332, gnl\|mm7\|chr9 (106273207-106272900)
	1-332, gnl\|Mm7\|chr9 (106273179-106272837)
	1-332, gnl\|oryCun1\|scaffold_96908 (7673-7968)
	1-332, gnl\|panTro1\|chr2 (53447702-53447996)
	1-332, gnl\|rheMac2\|chr2 (84581492-84581197)
	1-332, gnl\|rn3\|chr8 (111712691-111712396)