Non-Coding RNA Search

rtes09_o6.y1

Sequence:


               
               GGCGCTTGGACTTTTGATTCAGCTTGTAAAGCCTGATTTGGTTAAGCCTTTGTAGTTGAC
TTTTGTTAGATATGACCCAAAGGACTATTACCCCACATGTGGTAAAAGCCTAAAAAACCC
TGGCATGTGGGAATCTAGAATCAAGGGAACCTAAGGAGAGAAAAGGAGGCAGAAAAGAAG
AGAAACTGAGTTGTATCACAGGGCCAACTGCATGGGCAAATATGGAGGTAAAATGCAGGG
TAGATGCTGCCTCTCACCTCCAGGCTCATTTACTGTCTGCTTCTGATCATGCAGCCTCCC
CCATGCCCTCTAAGCCTCTTCCCTTACAGGCTTGGGGCATGGTGCTCAAATAGTCGAGCT
TCCTTGGAGTATAGTTTAAAACACCATGAATTTGAGGCTCATTGACAAACACAATCCCTG
AATCATTAGCCTAAGTGTCTGTTCATGCAGAGTGTGGCTACCCTAGCAGTGAGAAAGAAC
CTTGAGTGTCCTTGAAGGGTAAGGGCAGAATATTGGGAATAGAAACACTCATTTGATGCT
TGTTTGAACAGTGAGTGAGGTTCGCAAAATATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCTTGGACTTTTGATTCAGCTTGTAAAGCCTGATTTGGTTAAGCCTTTGTAGTTGAC
TTTTGTTAGATATGACCCAAAGGACTATTACCCCACATGTGGTAAAAGCCTAAAAAACCC
TGGCATGTGGGAATCTAGAATCAAGGGAACCTAAGGAGAGAAAAGGAGGCAGAAAAGAAG
AGAAACTGAGTTGTATCACAGGGCCAACTGCATGGGCAAATATGGAGGTAAAATGCAGGG
TAGATGCTGCCTCTCACCTCCAGGCTCATTTACTGTCTGCTTCTGATCATGCAGCCTCCC
CCATGCCCTCTAAGCCTCTTCCCTTACAGGCTTGGGGCATGGTGCTCAAATAGTCGAGCT
TCCTTGGAGTATAGTTTAAAACACCATGAATTTGAGGCTCATTGACAAACACAATCCCTG
AATCATTAGCCTAAGTGTCTGTTCATGCAGAGTGTGGCTACCCTAGCAGTGAGAAAGAAC
CTTGAGTGTCCTTGAAGGGTAAGGGCAGAATATTGGGAATAGAAACACTCATTTGATGCT
TGTTTGAACAGTGAGTGAGGTTCGCAAAATATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               156-268, + strand, RNAz p=0.934609

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-268, + strand, RNAz p=0.934609

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               5-302, gnl|bosTau2|chr23 (36316338-36316635)
               

               
               5-302, gnl|Hg17|chr6 (16168304-16168008)
               


               
               317-573, gnl|bosTau2|chr23 (36316960-36317210)
               

               
               317-573, gnl|Hg17|chr6 (16167954-16167706)
               

               
               317-573, gnl|Mm7|chr13 (44772576-44772326)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-302, gnl|bosTau2|chr23 (36316338-36316635)
               

               
               5-302, gnl|Hg17|chr6 (16168304-16168008)
               


               
               317-573, gnl|bosTau2|chr23 (36316960-36317210)
               

               
               317-573, gnl|Hg17|chr6 (16167954-16167706)
               

               
               317-573, gnl|Mm7|chr13 (44772576-44772326)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	5-302, gnl\|bosTau2\|chr23 (36316338-36316635)
	5-302, gnl\|Hg17\|chr6 (16168304-16168008)

	317-573, gnl\|bosTau2\|chr23 (36316960-36317210)
	317-573, gnl\|Hg17\|chr6 (16167954-16167706)
	317-573, gnl\|Mm7\|chr13 (44772576-44772326)