Non-Coding RNA Search

rtes10_l9.y1

Sequence:


               
               AAAAGATGCAAACTTTCTGTGTGGCCGTCTTGGCTATTGGCTATTTCTCACCACCGCCTG
ACCGAACCACATCCCAAGAGAGGCTCCTGGGAATTAACTCCAGCAAAGGGACACCGCCGA
GGCAAGTCCATGACGTGGAAATGGATCTGCTGAGGATGGCACAGGCAGCGGGGAGCTGCT
GGCCAGGAGGAGCCTCAGCGGCAACAGCTGAAGGAAGTCAGAGCGTGGAGGAGCCACAAA
GTCTGGAGGGGACAGATATTTTTGGTAACACTGTACATAAGGAGATTTCGTGCAGTTATT
ACCAAAAGAAGTCTATACAGCGGAAACACATATGCTCCATAAGAGTCAGCCCGTTATGTG
CCTCTAATAATGTTACATATTCCAACTCCTGCGTGTACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGATGCAAACTTTCTGTGTGGCCGTCTTGGCTATTGGCTATTTCTCACCACCGCCTG
ACCGAACCACATCCCAAGAGAGGCTCCTGGGAATTAACTCCAGCAAAGGGACACCGCCGA
GGCAAGTCCATGACGTGGAAATGGATCTGCTGAGGATGGCACAGGCAGCGGGGAGCTGCT
GGCCAGGAGGAGCCTCAGCGGCAACAGCTGAAGGAAGTCAGAGCGTGGAGGAGCCACAAA
GTCTGGAGGGGACAGATATTTTTGGTAACACTGTACATAAGGAGATTTCGTGCAGTTATT
ACCAAAAGAAGTCTATACAGCGGAAACACATATGCTCCATAAGAGTCAGCCCGTTATGTG
CCTCTAATAATGTTACATATTCCAACTCCTGCGTGTACTGC

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               280-401, gnl|bosTau2|chr19 (7399433-7399312)
               

               
               280-401, gnl|canFam2|chr4 (63637189-63636925)
               

               
               280-401, gnl|dasNov1|scaffold_20501 (48861-49127)
               

               
               280-401, gnl|echTel1|scaffold_264774 (537-272)
               

               
               280-401, gnl|hg17|chr5 (147725662-147725924)
               

               
               280-401, gnl|Hg17|chr5 (147725774-147725895)
               

               
               280-401, gnl|loxAfr1|scaffold_3231 (49051-48786)
               

               
               280-401, gnl|mm7|chr18 (62964175-62963908)
               

               
               280-401, gnl|Mm7|chr18 (62964055-62963934)
               

               
               280-401, gnl|oryCun1|scaffold_204241 (39243-38980)
               

               
               280-401, gnl|panTro1|chr4 (154614301-154614563)
               

               
               280-401, gnl|rheMac2|chr6 (144908589-144908852)
               

               
               280-401, gnl|rn3|chr18 (58660300-58660032)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               280-401, gnl|bosTau2|chr19 (7399433-7399312)
               

               
               280-401, gnl|canFam2|chr4 (63637189-63636925)
               

               
               280-401, gnl|dasNov1|scaffold_20501 (48861-49127)
               

               
               280-401, gnl|echTel1|scaffold_264774 (537-272)
               

               
               280-401, gnl|hg17|chr5 (147725662-147725924)
               

               
               280-401, gnl|Hg17|chr5 (147725774-147725895)
               

               
               280-401, gnl|loxAfr1|scaffold_3231 (49051-48786)
               

               
               280-401, gnl|mm7|chr18 (62964175-62963908)
               

               
               280-401, gnl|Mm7|chr18 (62964055-62963934)
               

               
               280-401, gnl|oryCun1|scaffold_204241 (39243-38980)
               

               
               280-401, gnl|panTro1|chr4 (154614301-154614563)
               

               
               280-401, gnl|rheMac2|chr6 (144908589-144908852)
               

               
               280-401, gnl|rn3|chr18 (58660300-58660032)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	280-401, gnl\|bosTau2\|chr19 (7399433-7399312)
	280-401, gnl\|canFam2\|chr4 (63637189-63636925)
	280-401, gnl\|dasNov1\|scaffold_20501 (48861-49127)
	280-401, gnl\|echTel1\|scaffold_264774 (537-272)
	280-401, gnl\|hg17\|chr5 (147725662-147725924)
	280-401, gnl\|Hg17\|chr5 (147725774-147725895)
	280-401, gnl\|loxAfr1\|scaffold_3231 (49051-48786)
	280-401, gnl\|mm7\|chr18 (62964175-62963908)
	280-401, gnl\|Mm7\|chr18 (62964055-62963934)
	280-401, gnl\|oryCun1\|scaffold_204241 (39243-38980)
	280-401, gnl\|panTro1\|chr4 (154614301-154614563)
	280-401, gnl\|rheMac2\|chr6 (144908589-144908852)
	280-401, gnl\|rn3\|chr18 (58660300-58660032)