Non-Coding RNA Search

rtes11_h24.y1

Sequence:


               
               GCTGCATTGGCCGTATTTGGCACCCAGAATGCTTCATTCTCTGATGGTCTATTAATAAGG
TTACCTTGCTAGAGTTTGGAGCAGGGCCCCAGATTGGCCACAATGGGAAGGACCGGATTC
CGCTCTCTTCCACGAAGAGTCAATGGGACTGGCTAAGATCAAGGTGTGAGGCTTTTCCAT
CTGTCATCAGTCCCCTTTTGCTTTCTTTTACGACCACATGAAACTTGAGAAGCCACCTAA
AGCTAAATCACTTAGTGGAGTTGGGCAGTTCCCAAGTGTCCAACAAGAAGGCCTGGTTTA
GGCTGCGATGGCCACTGTCATTCCTGGTGATTTGTCAGAAGTAAGAGATACCCAGAAAGT
CCCTTCAGGGAAACGTAAGCGTGGTGAAACCAAACCAAGAAAAAACTTTCCTTGCCAACT
GTGTGACAAGGCCTTTAACAGTGTTGAGAAATTAAAGGTTCACTCCTACTCTCACACAGG
AGAGAGGCCCTACAAGTGCATACAACAAGACTGCACGAAAGCCTTTGTTTCTAAGTACAA
ATTACAAAGGTATTAAACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCATTGGCCGTATTTGGCACCCAGAATGCTTCATTCTCTGATGGTCTATTAATAAGG
TTACCTTGCTAGAGTTTGGAGCAGGGCCCCAGATTGGCCACAATGGGAAGGACCGGATTC
CGCTCTCTTCCACGAAGAGTCAATGGGACTGGCTAAGATCAAGGTGTGAGGCTTTTCCAT
CTGTCATCAGTCCCCTTTTGCTTTCTTTTACGACCACATGAAACTTGAGAAGCCACCTAA
AGCTAAATCACTTAGTGGAGTTGGGCAGTTCCCAAGTGTCCAACAAGAAGGCCTGGTTTA
GGCTGCGATGGCCACTGTCATTCCTGGTGATTTGTCAGAAGTAAGAGATACCCAGAAAGT
CCCTTCAGGGAAACGTAAGCGTGGTGAAACCAAACCAAGAAAAAACTTTCCTTGCCAACT
GTGTGACAAGGCCTTTAACAGTGTTGAGAAATTAAAGGTTCACTCCTACTCTCACACAGG
AGAGAGGCCCTACAAGTGCATACAACAAGACTGCACGAAAGCCTTTGTTTCTAAGTACAA
ATTACAAAGGTATTAAACTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               387-560, - strand, RNAz p=0.942766

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               387-560, - strand, RNAz p=0.942766

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               188-560, gnl|bosTau2|chr14 (11595211-11595583)
               

               
               188-560, gnl|Hg17|chr8 (57243502-57243130)
               

               
               188-560, gnl|Mm7|chr4 (3832955-3832583)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               188-560, gnl|bosTau2|chr14 (11595211-11595583)
               

               
               188-560, gnl|Hg17|chr8 (57243502-57243130)
               

               
               188-560, gnl|Mm7|chr4 (3832955-3832583)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	188-560, gnl\|bosTau2\|chr14 (11595211-11595583)
	188-560, gnl\|Hg17\|chr8 (57243502-57243130)
	188-560, gnl\|Mm7\|chr4 (3832955-3832583)