Non-Coding RNA Search

rtes11_n11.y1

Sequence:


               
               GGAAAGAAATGATTCAATGTTCCCAGCTTTTTAGTGGCTCCTTTCCATAACTTGCAATGG
TGATATCTACTTCCTGATATTTTTAATCTTCTCCAGTTATTTCTAAGGCCATTTGGCAGA
GAAGTGGGTGTTGTACAAATTATCACAGCCATTATTATCTGAAGGTCATAGTATAAAACT
AACCAATGAGCTAGAAATTCCAATTTTTTCCCAAGTGGGTCGGCCTTGAAGAAAGAAAAG
CAGTGAGAGAGAGATAAAGAGAATTCCTTAAGGAGGCTTGATAAGTCTTAGAGCTCACAT
CTGTCATTTCAAAGTGCCGTCTCATTCATTCTGCTTTGAGCTCAACTTTCAGGAAAGTCA
TCTCAACACTTTAAGCTGCAAAATGGCCCCGTTGCATCTAGGAGTAGTGAAGCTTCCCAG
AATCCTGTGAAATAATGTGATTTGTGAGCAGAATCACCCAAACAATATTTCTTAGGTTTA
TTTTAAGCATTTGCTTTTCCTTTCTCACTGATAACATTAACTCAGGTGAGCACACAGAGC
TTCGCAGTGCTAATCTGGAAAAAGATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGAAATGATTCAATGTTCCCAGCTTTTTAGTGGCTCCTTTCCATAACTTGCAATGG
TGATATCTACTTCCTGATATTTTTAATCTTCTCCAGTTATTTCTAAGGCCATTTGGCAGA
GAAGTGGGTGTTGTACAAATTATCACAGCCATTATTATCTGAAGGTCATAGTATAAAACT
AACCAATGAGCTAGAAATTCCAATTTTTTCCCAAGTGGGTCGGCCTTGAAGAAAGAAAAG
CAGTGAGAGAGAGATAAAGAGAATTCCTTAAGGAGGCTTGATAAGTCTTAGAGCTCACAT
CTGTCATTTCAAAGTGCCGTCTCATTCATTCTGCTTTGAGCTCAACTTTCAGGAAAGTCA
TCTCAACACTTTAAGCTGCAAAATGGCCCCGTTGCATCTAGGAGTAGTGAAGCTTCCCAG
AATCCTGTGAAATAATGTGATTTGTGAGCAGAATCACCCAAACAATATTTCTTAGGTTTA
TTTTAAGCATTTGCTTTTCCTTTCTCACTGATAACATTAACTCAGGTGAGCACACAGAGC
TTCGCAGTGCTAATCTGGAAAAAGATGG

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               168-563, gnl|bosTau2|chr1 (4215612-4216006)
               

               
               168-563, gnl|canFam2|chr31 (28915320-28915659)
               

               
               168-563, gnl|echTel1|scaffold_224554 (7020-7334)
               

               
               168-563, gnl|hg17|chr21 (31193833-31194181)
               

               
               168-563, gnl|Hg17|chr21 (31193834-31194241)
               

               
               168-563, gnl|mm7|chr16 (89640625-89640973)
               

               
               168-563, gnl|Mm7|chr16 (89640626-89641035)
               

               
               168-563, gnl|panTro1|chr22 (31160748-31161097)
               

               
               168-563, gnl|rheMac2|chr3 (15611449-15611099)
               

               
               168-563, gnl|rn3|chr11 (29393332-29393664)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-563, gnl|bosTau2|chr1 (4215612-4216006)
               

               
               168-563, gnl|canFam2|chr31 (28915320-28915659)
               

               
               168-563, gnl|echTel1|scaffold_224554 (7020-7334)
               

               
               168-563, gnl|hg17|chr21 (31193833-31194181)
               

               
               168-563, gnl|Hg17|chr21 (31193834-31194241)
               

               
               168-563, gnl|mm7|chr16 (89640625-89640973)
               

               
               168-563, gnl|Mm7|chr16 (89640626-89641035)
               

               
               168-563, gnl|panTro1|chr22 (31160748-31161097)
               

               
               168-563, gnl|rheMac2|chr3 (15611449-15611099)
               

               
               168-563, gnl|rn3|chr11 (29393332-29393664)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	168-563, gnl\|bosTau2\|chr1 (4215612-4216006)
	168-563, gnl\|canFam2\|chr31 (28915320-28915659)
	168-563, gnl\|echTel1\|scaffold_224554 (7020-7334)
	168-563, gnl\|hg17\|chr21 (31193833-31194181)
	168-563, gnl\|Hg17\|chr21 (31193834-31194241)
	168-563, gnl\|mm7\|chr16 (89640625-89640973)
	168-563, gnl\|Mm7\|chr16 (89640626-89641035)
	168-563, gnl\|panTro1\|chr22 (31160748-31161097)
	168-563, gnl\|rheMac2\|chr3 (15611449-15611099)
	168-563, gnl\|rn3\|chr11 (29393332-29393664)