Non-Coding RNA Search

rtes11_n8.y1

Sequence:


               
               AAGGTACATGCAATGGGTCTGTTGACTGTGAAGATATCACTAATCATAATATCCTCCAGG
CAAGAGATCGAATAGAAGAATTTTTCCGGAGCCAAGCATATATCTTCAACCATGACTTCA
ATAAAACTCTACCAGCTATGCATTTTGTGGATCACAGTTTTCAAATATGGTTTGTGGTCC
TGGGACTTTTAGTCCCGATGTTGATGTTACATGTCAGACCTGCGTTTCTATCCACATCTA
CGGAGCTAAATCTTGCCCATAAACTTCAGAAATCGCAACATGAAAACTAGAGGTGGAAGC
ATTGCTACTTGCTTGTGGAGGTGGTGGACATAAGATAATTTGTTCATATCCCAGAGCATC
ATAGATAGTTTCATTAAGTATGATCACTAAGACCAAAATATTGGAAACATACATTTTAGA
AACCTTGAAACGATAGTCGACCTGGCATTTCTAAGAAGGCTTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGTACATGCAATGGGTCTGTTGACTGTGAAGATATCACTAATCATAATATCCTCCAGG
CAAGAGATCGAATAGAAGAATTTTTCCGGAGCCAAGCATATATCTTCAACCATGACTTCA
ATAAAACTCTACCAGCTATGCATTTTGTGGATCACAGTTTTCAAATATGGTTTGTGGTCC
TGGGACTTTTAGTCCCGATGTTGATGTTACATGTCAGACCTGCGTTTCTATCCACATCTA
CGGAGCTAAATCTTGCCCATAAACTTCAGAAATCGCAACATGAAAACTAGAGGTGGAAGC
ATTGCTACTTGCTTGTGGAGGTGGTGGACATAAGATAATTTGTTCATATCCCAGAGCATC
ATAGATAGTTTCATTAAGTATGATCACTAAGACCAAAATATTGGAAACATACATTTTAGA
AACCTTGAAACGATAGTCGACCTGGCATTTCTAAGAAGGCTTTTGA

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               58-167, gnl|bosTau2|chr19 (32494153-32494262)
               

               
               58-167, gnl|canFam2|chr9 (25961079-25960863)
               

               
               58-167, gnl|echTel1|scaffold_304519 (12382-12593)
               

               
               58-167, gnl|hg17|chr17 (35284962-35285178)
               

               
               58-167, gnl|Hg17|chr17 (35285031-35285140)
               

               
               58-167, gnl|loxAfr1|scaffold_12311 (6738-6954)
               

               
               58-167, gnl|mm7|chr11 (98666465-98666682)
               

               
               58-167, gnl|Mm7|chr11 (98666535-98666644)
               

               
               58-167, gnl|monDom2|scaffold_18 (48876721-48876936)
               

               
               58-167, gnl|oryCun1|scaffold_191865 (10032-9818)
               

               
               58-167, gnl|panTro1|chr19 (38522751-38522967)
               

               
               58-167, gnl|rheMac2|chr16 (49970774-49970990)
               

               
               58-167, gnl|rn3|chr10 (87392744-87392962)
               


               
               168-464, gnl|bosTau2|chr19 (32495034-32495322)
               

               
               168-464, gnl|Hg17|chr17 (35286461-35286762)
               

               
               168-464, gnl|Mm7|chr11 (98667249-98667538)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-167, gnl|bosTau2|chr19 (32494153-32494262)
               

               
               58-167, gnl|canFam2|chr9 (25961079-25960863)
               

               
               58-167, gnl|echTel1|scaffold_304519 (12382-12593)
               

               
               58-167, gnl|hg17|chr17 (35284962-35285178)
               

               
               58-167, gnl|Hg17|chr17 (35285031-35285140)
               

               
               58-167, gnl|loxAfr1|scaffold_12311 (6738-6954)
               

               
               58-167, gnl|mm7|chr11 (98666465-98666682)
               

               
               58-167, gnl|Mm7|chr11 (98666535-98666644)
               

               
               58-167, gnl|monDom2|scaffold_18 (48876721-48876936)
               

               
               58-167, gnl|oryCun1|scaffold_191865 (10032-9818)
               

               
               58-167, gnl|panTro1|chr19 (38522751-38522967)
               

               
               58-167, gnl|rheMac2|chr16 (49970774-49970990)
               

               
               58-167, gnl|rn3|chr10 (87392744-87392962)
               


               
               168-464, gnl|bosTau2|chr19 (32495034-32495322)
               

               
               168-464, gnl|Hg17|chr17 (35286461-35286762)
               

               
               168-464, gnl|Mm7|chr11 (98667249-98667538)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.207814)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	58-167, gnl\|bosTau2\|chr19 (32494153-32494262)
	58-167, gnl\|canFam2\|chr9 (25961079-25960863)
	58-167, gnl\|echTel1\|scaffold_304519 (12382-12593)
	58-167, gnl\|hg17\|chr17 (35284962-35285178)
	58-167, gnl\|Hg17\|chr17 (35285031-35285140)
	58-167, gnl\|loxAfr1\|scaffold_12311 (6738-6954)
	58-167, gnl\|mm7\|chr11 (98666465-98666682)
	58-167, gnl\|Mm7\|chr11 (98666535-98666644)
	58-167, gnl\|monDom2\|scaffold_18 (48876721-48876936)
	58-167, gnl\|oryCun1\|scaffold_191865 (10032-9818)
	58-167, gnl\|panTro1\|chr19 (38522751-38522967)
	58-167, gnl\|rheMac2\|chr16 (49970774-49970990)
	58-167, gnl\|rn3\|chr10 (87392744-87392962)

	168-464, gnl\|bosTau2\|chr19 (32495034-32495322)
	168-464, gnl\|Hg17\|chr17 (35286461-35286762)
	168-464, gnl\|Mm7\|chr11 (98667249-98667538)