Non-Coding RNA Search

rtes16_g1.y1

Sequence:


               
               GAAGAAGCCTGTTCAGAAAAGCGCTAAAGAAAAAGGAAACAAGCCGTCTGTACATAACCT
GAGCAAAACTCAGCAGACCAAACTCACCGTGGGCAGCCTGGGATTGGGCCTGATCATCAT
TCAGCATGGGCCCTACCTTCAGATCACCCACCTCATTAAGAAGGGGGCTGCAGCCAGGGA
TGGAAAACTCCAGCCAGGTGATGTTCTGATTACTGTTGGTCATGCCAATGTGTTAGGATA
TACTCTTCGAGAATTTCTAAAGCTTTTGCAAAATATCACCATAGGAACAGTGCTGCAAAT
CAAGGTTTATCGAGATTTCATTGACATACCCAAAGAATGGCAAGACATATACGATTTAAT
CCCTGAGACCAAATTCCCAATAACACGCACCACAAAGAAAACTGAACAGGCAAAAGATGA
CACTTCCATGAGCAGTGGTGACGATGAAGATGGAGTTTTAGATAAAAGACTCAAGTACTT
TAAGTATCCACGGACCACTGGACATTACCCTGCAAGGAGACCACTGTCTATCTCCCGAGA
ATGGCATGGATACAAAAAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAAGCCTGTTCAGAAAAGCGCTAAAGAAAAAGGAAACAAGCCGTCTGTACATAACCT
GAGCAAAACTCAGCAGACCAAACTCACCGTGGGCAGCCTGGGATTGGGCCTGATCATCAT
TCAGCATGGGCCCTACCTTCAGATCACCCACCTCATTAAGAAGGGGGCTGCAGCCAGGGA
TGGAAAACTCCAGCCAGGTGATGTTCTGATTACTGTTGGTCATGCCAATGTGTTAGGATA
TACTCTTCGAGAATTTCTAAAGCTTTTGCAAAATATCACCATAGGAACAGTGCTGCAAAT
CAAGGTTTATCGAGATTTCATTGACATACCCAAAGAATGGCAAGACATATACGATTTAAT
CCCTGAGACCAAATTCCCAATAACACGCACCACAAAGAAAACTGAACAGGCAAAAGATGA
CACTTCCATGAGCAGTGGTGACGATGAAGATGGAGTTTTAGATAAAAGACTCAAGTACTT
TAAGTATCCACGGACCACTGGACATTACCCTGCAAGGAGACCACTGTCTATCTCCCGAGA
ATGGCATGGATACAAAAAGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56966893|pdb|1WIF|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56966893|pdb|1WIF|A

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               195-387, gnl|bosTau2|chr25 (17955438-17955630)
               

               
               195-387, gnl|canFam2|chr6 (26650420-26650234)
               

               
               195-387, gnl|echTel1|scaffold_303482 (2517-2315)
               

               
               195-387, gnl|hg17|chr16 (21907385-21907572)
               

               
               195-387, gnl|Hg17|chr16 (21907616-21907424)
               

               
               195-387, gnl|mm7|chr7 (116585090-116585268)
               

               
               195-387, gnl|Mm7|chr7 (116585312-116585120)
               

               
               195-387, gnl|monDom2|scaffold_19 (42363866-42364055)
               

               
               195-387, gnl|oryCun1|scaffold_124692 (834-1000)
               

               
               195-387, gnl|panTro1|chr18_random (10067344-10067531)
               

               
               195-387, gnl|rheMac2|chr20 (20399545-20399732)
               

               
               195-387, gnl|rn3|chr1 (179634980-179635135)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               195-387, gnl|bosTau2|chr25 (17955438-17955630)
               

               
               195-387, gnl|canFam2|chr6 (26650420-26650234)
               

               
               195-387, gnl|echTel1|scaffold_303482 (2517-2315)
               

               
               195-387, gnl|hg17|chr16 (21907385-21907572)
               

               
               195-387, gnl|Hg17|chr16 (21907616-21907424)
               

               
               195-387, gnl|mm7|chr7 (116585090-116585268)
               

               
               195-387, gnl|Mm7|chr7 (116585312-116585120)
               

               
               195-387, gnl|monDom2|scaffold_19 (42363866-42364055)
               

               
               195-387, gnl|oryCun1|scaffold_124692 (834-1000)
               

               
               195-387, gnl|panTro1|chr18_random (10067344-10067531)
               

               
               195-387, gnl|rheMac2|chr20 (20399545-20399732)
               

               
               195-387, gnl|rn3|chr1 (179634980-179635135)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	195-387, gnl\|bosTau2\|chr25 (17955438-17955630)
	195-387, gnl\|canFam2\|chr6 (26650420-26650234)
	195-387, gnl\|echTel1\|scaffold_303482 (2517-2315)
	195-387, gnl\|hg17\|chr16 (21907385-21907572)
	195-387, gnl\|Hg17\|chr16 (21907616-21907424)
	195-387, gnl\|mm7\|chr7 (116585090-116585268)
	195-387, gnl\|Mm7\|chr7 (116585312-116585120)
	195-387, gnl\|monDom2\|scaffold_19 (42363866-42364055)
	195-387, gnl\|oryCun1\|scaffold_124692 (834-1000)
	195-387, gnl\|panTro1\|chr18_random (10067344-10067531)
	195-387, gnl\|rheMac2\|chr20 (20399545-20399732)
	195-387, gnl\|rn3\|chr1 (179634980-179635135)