Non-Coding RNA Search

rtes16_g23.y1

Sequence:


               
               TATCTATTCTAAATGTAATAGTCTTATACTAGTTTCATATGTTCACTTTTCAAATGAGAG
TGGGAAGATTCTCAGTAGAGGAGAGAACTTTATTCTTGAGCTGGACATGAGCCACAGGCC
AGGTGACTGACATTCTCTGCTCTTTCTGTCCCTTTTCAGCATGGGACTGTGACAGGGAAG
GTTCCCAGAAGCCTGTCTGTGACCAGGACACGGGCATGTGCCGCTGCCGAGAGGGTGTCA
GCGGCAGGCGAGTGATCGCTGCGCCCGGGGTCATGGCCAGGAATTCCCTGCTTGCCTTCG
ATGTCACTCGTGCTTTGATCAGTGGGACCACACCGTTTCTTCCCTCTCCGAAGCAGTGCA
AGGGTTAATTAGGCTGGCTGCTAACCTGGGAGATAAAAGAGAGACCTTGCCTGTCTGTGA
GGCCGACTTCAAAGGCCTCAGAGAGAACATGTCTAAAATAGAAAGGATTTGGAGACATCC
TGTTTTCTCATCTGGGGAATTCTTAAAAGTCAAGGATTATCATGCCTCTGTTTGGAAACA
AATCATGCAGCTAAACGAGCAGCTGAAAACAGTGTATGAATTTCAAGATCTGAAAGAAAG
AGCAGTAAGATGAGTAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCTATTCTAAATGTAATAGTCTTATACTAGTTTCATATGTTCACTTTTCAAATGAGAG
TGGGAAGATTCTCAGTAGAGGAGAGAACTTTATTCTTGAGCTGGACATGAGCCACAGGCC
AGGTGACTGACATTCTCTGCTCTTTCTGTCCCTTTTCAGCATGGGACTGTGACAGGGAAG
GTTCCCAGAAGCCTGTCTGTGACCAGGACACGGGCATGTGCCGCTGCCGAGAGGGTGTCA
GCGGCAGGCGAGTGATCGCTGCGCCCGGGGTCATGGCCAGGAATTCCCTGCTTGCCTTCG
ATGTCACTCGTGCTTTGATCAGTGGGACCACACCGTTTCTTCCCTCTCCGAAGCAGTGCA
AGGGTTAATTAGGCTGGCTGCTAACCTGGGAGATAAAAGAGAGACCTTGCCTGTCTGTGA
GGCCGACTTCAAAGGCCTCAGAGAGAACATGTCTAAAATAGAAAGGATTTGGAGACATCC
TGTTTTCTCATCTGGGGAATTCTTAAAAGTCAAGGATTATCATGCCTCTGTTTGGAAACA
AATCATGCAGCTAAACGAGCAGCTGAAAACAGTGTATGAATTTCAAGATCTGAAAGAAAG
AGCAGTAAGATGAGTAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               417-536, + strand, RNAz p=0.772638

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               417-536, + strand, RNAz p=0.772638

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-538, gnl|bosTau2|chr4 (19137889-19137370)
               

               
               24-538, gnl|Hg17|chr7 (107290540-107290024)
               

               
               24-538, gnl|Mm7|chr12 (29049823-29050328)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-538, gnl|bosTau2|chr4 (19137889-19137370)
               

               
               24-538, gnl|Hg17|chr7 (107290540-107290024)
               

               
               24-538, gnl|Mm7|chr12 (29049823-29050328)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	24-538, gnl\|bosTau2\|chr4 (19137889-19137370)
	24-538, gnl\|Hg17\|chr7 (107290540-107290024)
	24-538, gnl\|Mm7\|chr12 (29049823-29050328)