Non-Coding RNA Search

rtes16_j17.y1

Sequence:


               
               AGGAGGAGATCAAGGTCTGAGGCAGCAGAGACAACAGGTGAGGACTGGAGACTGAACACT
GATGGAAACAATTAAAAGCTGAATCTGACAAGGACATCAGAGCTAGGTCAAACAAGAAAT
ATGATAGAATCTAAGTGCTGGACAATGTCCCTCTCAAGGCCTGTCTTTGGAGGATATGAA
GAGAAGTCTTCCATTCTCACCCATTGACAAATATGACATATTGGTAAAAAAATAAGTAAT
GACCTTCAGATCAAGAAGCTTGCAAAAATATAGCACTTAATTATTTGCCCCCTTCTCTGC
ATTGTACCGAGTGCTCTGTGCTCTACTCAAGTAACTTGCTGCTGCCAGCGCCAAGGTGTC
ACAAATGCCATCAGCACTGTTATGAAACTGACTCAGGAAGGCAAGCCTGCCCATCATACC
AGGAGCTGGCACAGTGCAGTGGGAAGATAGCTGAAGAAAATGAGAAATCTGCCCTCCACG
CTCGTCCCAGCCAAGAAGACAAGAATACTTCCACCAGACAAAATAGTTTTGCCATTGAAA
ATCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGGAGATCAAGGTCTGAGGCAGCAGAGACAACAGGTGAGGACTGGAGACTGAACACT
GATGGAAACAATTAAAAGCTGAATCTGACAAGGACATCAGAGCTAGGTCAAACAAGAAAT
ATGATAGAATCTAAGTGCTGGACAATGTCCCTCTCAAGGCCTGTCTTTGGAGGATATGAA
GAGAAGTCTTCCATTCTCACCCATTGACAAATATGACATATTGGTAAAAAAATAAGTAAT
GACCTTCAGATCAAGAAGCTTGCAAAAATATAGCACTTAATTATTTGCCCCCTTCTCTGC
ATTGTACCGAGTGCTCTGTGCTCTACTCAAGTAACTTGCTGCTGCCAGCGCCAAGGTGTC
ACAAATGCCATCAGCACTGTTATGAAACTGACTCAGGAAGGCAAGCCTGCCCATCATACC
AGGAGCTGGCACAGTGCAGTGGGAAGATAGCTGAAGAAAATGAGAAATCTGCCCTCCACG
CTCGTCCCAGCCAAGAAGACAAGAATACTTCCACCAGACAAAATAGTTTTGCCATTGAAA
ATCTAA

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               4-135, gnl|bosTau2|chr2 (27326079-27326211)
               

               
               4-135, gnl|canFam2|chr6 (74915754-74915333)
               

               
               4-135, gnl|dasNov1|scaffold_18590 (82942-83365)
               

               
               4-135, gnl|echTel1|scaffold_315159 (3183-2790)
               

               
               4-135, gnl|hg17|chr1 (74693176-74693582)
               

               
               4-135, gnl|Hg17|chr1 (74693357-74693488)
               

               
               4-135, gnl|panTro1|chr1 (73260878-73261284)
               

               
               4-135, gnl|rheMac2|chr1 (77331710-77332116)
               


               
               215-536, gnl|bosTau2|chr2 (27365567-27365897)
               

               
               215-536, gnl|Hg17|chr1 (74722192-74722524)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-135, gnl|bosTau2|chr2 (27326079-27326211)
               

               
               4-135, gnl|canFam2|chr6 (74915754-74915333)
               

               
               4-135, gnl|dasNov1|scaffold_18590 (82942-83365)
               

               
               4-135, gnl|echTel1|scaffold_315159 (3183-2790)
               

               
               4-135, gnl|hg17|chr1 (74693176-74693582)
               

               
               4-135, gnl|Hg17|chr1 (74693357-74693488)
               

               
               4-135, gnl|panTro1|chr1 (73260878-73261284)
               

               
               4-135, gnl|rheMac2|chr1 (77331710-77332116)
               


               
               215-536, gnl|bosTau2|chr2 (27365567-27365897)
               

               
               215-536, gnl|Hg17|chr1 (74722192-74722524)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	4-135, gnl\|bosTau2\|chr2 (27326079-27326211)
	4-135, gnl\|canFam2\|chr6 (74915754-74915333)
	4-135, gnl\|dasNov1\|scaffold_18590 (82942-83365)
	4-135, gnl\|echTel1\|scaffold_315159 (3183-2790)
	4-135, gnl\|hg17\|chr1 (74693176-74693582)
	4-135, gnl\|Hg17\|chr1 (74693357-74693488)
	4-135, gnl\|panTro1\|chr1 (73260878-73261284)
	4-135, gnl\|rheMac2\|chr1 (77331710-77332116)

	215-536, gnl\|bosTau2\|chr2 (27365567-27365897)
	215-536, gnl\|Hg17\|chr1 (74722192-74722524)