Non-Coding RNA Search

rtes16_n23.y1

Sequence:


               
               CTTTCCAGAGACGGAGCTAGCAGAGCTTCCCAGCACGAGCTGGAGAAGGACCTGAGTGAC
AAGCAGGCGGCTTACCGCATCGACGACAAGTGCCACCACCTGCGGAACACGTCGGACGGC
ATCAGCTACTTCCGCGGGGTGGAGAGAGTGGATGCCACGGTCTCCGTGCCTGAGTCCTGG
GCCAAATTTACTGATGACAATATTCTTCGCTCCCAGAGTGAGCGAGCTGCTTCTGTGAAG
CTAAGAGACGACATCCAGAACCTCCTGGTGGTGACAGCCAACGAGATGTGGAATCAGTTC
AACAAAGTGAACCTGGCTTTCACCAACCGCATTGCCGAGACTGCAGATGCTAAAAATAAG
ATGCAGATTCACCTGGCAAAGACCCTGCAGGAGATCTTCCAGACGGAGACGACCATCGAC
TCCATCAAGAAGGCCATCAGGGACAAGGCGGCCTTCCTGAAGGTGGCGCAGACCAGGCTG
GACGAGCGCACGCGGAGACCCAACATCGAGCTGTGCCGAGACATGGCTCAGCTGCGCCTG
GTTAACGAGGTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCCAGAGACGGAGCTAGCAGAGCTTCCCAGCACGAGCTGGAGAAGGACCTGAGTGAC
AAGCAGGCGGCTTACCGCATCGACGACAAGTGCCACCACCTGCGGAACACGTCGGACGGC
ATCAGCTACTTCCGCGGGGTGGAGAGAGTGGATGCCACGGTCTCCGTGCCTGAGTCCTGG
GCCAAATTTACTGATGACAATATTCTTCGCTCCCAGAGTGAGCGAGCTGCTTCTGTGAAG
CTAAGAGACGACATCCAGAACCTCCTGGTGGTGACAGCCAACGAGATGTGGAATCAGTTC
AACAAAGTGAACCTGGCTTTCACCAACCGCATTGCCGAGACTGCAGATGCTAAAAATAAG
ATGCAGATTCACCTGGCAAAGACCCTGCAGGAGATCTTCCAGACGGAGACGACCATCGAC
TCCATCAAGAAGGCCATCAGGGACAAGGCGGCCTTCCTGAAGGTGGCGCAGACCAGGCTG
GACGAGCGCACGCGGAGACCCAACATCGAGCTGTGCCGAGACATGGCTCAGCTGCGCCTG
GTTAACGAGGTATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61810135|ref|XP_601204.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61810135|ref|XP_601204.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               264-381, - strand, RNAz p=0.520447

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               264-381, - strand, RNAz p=0.520447

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               156-381, gnl|bosTau2|chr19 (23338741-23338516)
               

               
               156-381, gnl|Hg17|chr17 (15156526-15156301)
               

               
               156-381, gnl|Mm7|chr11 (63165299-63165523)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               156-381, gnl|bosTau2|chr19 (23338741-23338516)
               

               
               156-381, gnl|Hg17|chr17 (15156526-15156301)
               

               
               156-381, gnl|Mm7|chr11 (63165299-63165523)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	156-381, gnl\|bosTau2\|chr19 (23338741-23338516)
	156-381, gnl\|Hg17\|chr17 (15156526-15156301)
	156-381, gnl\|Mm7\|chr11 (63165299-63165523)