Non-Coding RNA Search

rtes20_b4r1.y1

Sequence:


               
               CTCCCCCAAGTGAGGAATTTGAGGCTGGCAGCATCACCTCCATCTTCAGCAACCGGGCGG
TGGTGAAATACAGCCGTCTGGAGGACGTGCTGCACGGCTGTTCCTGGAAGGTCAACAACA
AGCTGGACGGTATGTACCTGCCGCTGCCTGTGGACCACATCATCCAGAGGACGAAACAGA
TGATCAACAAGATAGTACAGTACAGTCTGATTGAAGGCAACTGTGAGCACTTTGTCAACG
ACCTCCGATACGGCGTGCGCAGGAGCCAGCAGGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCCCAAGTGAGGAATTTGAGGCTGGCAGCATCACCTCCATCTTCAGCAACCGGGCGG
TGGTGAAATACAGCCGTCTGGAGGACGTGCTGCACGGCTGTTCCTGGAAGGTCAACAACA
AGCTGGACGGTATGTACCTGCCGCTGCCTGTGGACCACATCATCCAGAGGACGAAACAGA
TGATCAACAAGATAGTACAGTACAGTCTGATTGAAGGCAACTGTGAGCACTTTGTCAACG
ACCTCCGATACGGCGTGCGCAGGAGCCAGCAGGTGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61878201|ref|XP_600915.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61878201|ref|XP_600915.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               3-275, gnl|bosTau2|chr29 (34512159-34512431)
               

               
               3-275, gnl|canFam2|chr18 (56488563-56488281)
               

               
               3-275, gnl|danRer3|chr9 (5013083-5013354)
               

               
               3-275, gnl|echTel1|scaffold_71836 (1357-1074)
               

               
               3-275, gnl|fr1|chrUn (328494389-328494654)
               

               
               3-275, gnl|hg17|chr11 (62990127-62990410)
               

               
               3-275, gnl|Hg17|chr11 (62990427-62990155)
               

               
               3-275, gnl|loxAfr1|scaffold_72545 (859-576)
               

               
               3-275, gnl|mm7|chr19 (7457458-7457177)
               

               
               3-275, gnl|Mm7|chr19 (7457162-7457430)
               

               
               3-275, gnl|oryCun1|scaffold_200846 (41085-41351)
               

               
               3-275, gnl|panTro1|chr9 (63988189-63988472)
               

               
               3-275, gnl|rheMac2|chr14 (10997617-10997334)
               

               
               3-275, gnl|rn3|chr1 (210533373-210533104)
               

               
               3-275, gnl|tetNig1|chr1 (7885207-7884945)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-275, gnl|bosTau2|chr29 (34512159-34512431)
               

               
               3-275, gnl|canFam2|chr18 (56488563-56488281)
               

               
               3-275, gnl|danRer3|chr9 (5013083-5013354)
               

               
               3-275, gnl|echTel1|scaffold_71836 (1357-1074)
               

               
               3-275, gnl|fr1|chrUn (328494389-328494654)
               

               
               3-275, gnl|hg17|chr11 (62990127-62990410)
               

               
               3-275, gnl|Hg17|chr11 (62990427-62990155)
               

               
               3-275, gnl|loxAfr1|scaffold_72545 (859-576)
               

               
               3-275, gnl|mm7|chr19 (7457458-7457177)
               

               
               3-275, gnl|Mm7|chr19 (7457162-7457430)
               

               
               3-275, gnl|oryCun1|scaffold_200846 (41085-41351)
               

               
               3-275, gnl|panTro1|chr9 (63988189-63988472)
               

               
               3-275, gnl|rheMac2|chr14 (10997617-10997334)
               

               
               3-275, gnl|rn3|chr1 (210533373-210533104)
               

               
               3-275, gnl|tetNig1|chr1 (7885207-7884945)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	3-275, gnl\|bosTau2\|chr29 (34512159-34512431)
	3-275, gnl\|canFam2\|chr18 (56488563-56488281)
	3-275, gnl\|danRer3\|chr9 (5013083-5013354)
	3-275, gnl\|echTel1\|scaffold_71836 (1357-1074)
	3-275, gnl\|fr1\|chrUn (328494389-328494654)
	3-275, gnl\|hg17\|chr11 (62990127-62990410)
	3-275, gnl\|Hg17\|chr11 (62990427-62990155)
	3-275, gnl\|loxAfr1\|scaffold_72545 (859-576)
	3-275, gnl\|mm7\|chr19 (7457458-7457177)
	3-275, gnl\|Mm7\|chr19 (7457162-7457430)
	3-275, gnl\|oryCun1\|scaffold_200846 (41085-41351)
	3-275, gnl\|panTro1\|chr9 (63988189-63988472)
	3-275, gnl\|rheMac2\|chr14 (10997617-10997334)
	3-275, gnl\|rn3\|chr1 (210533373-210533104)
	3-275, gnl\|tetNig1\|chr1 (7885207-7884945)