Non-Coding RNA Search

rtes22_e24.y1

Sequence:


               
               TTCCGCAGCCTGTTTCAAAGGTGTGTGGCCATGATGACGAGTGAGCTCACTCCAGGCACC
ATCAAGAACTTCTACCTGGCCGGCTGCAGGTACAAGGAAGAGCTGCTCACCACCGGCTGC
GAGAAGTGGATGGAGATGAACTTGGTCCCTTTGATGGGGACACAGATCCACCTCCGGAAA
GTCCCACAGGAGCTGCTCCACAAAGTGCTGAGGTCCCCCAGGTTGTTTACTTTTAGTGAG
TTTCACCTTCTGAAAACACTACTTTTGTGGGTCTACTTGCAAATGAACAACAAAACACAG
ACCATTCCGGCGTATGAAACCATGGTGGCATTTTTCAGCAGCTTCCCCAAGACGTGCTCC
TTTCTGGAACAGGACGTAGGACAGACCTTGACGCCGCTCTTCCTTTGCCTGCGTCTGCAC
GGCATCATCAAAGGCAAGCATCTGGAGGAGCTAAGGCACATTAACTTCTTCCCTGAATCC
TGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCGCAGCCTGTTTCAAAGGTGTGTGGCCATGATGACGAGTGAGCTCACTCCAGGCACC
ATCAAGAACTTCTACCTGGCCGGCTGCAGGTACAAGGAAGAGCTGCTCACCACCGGCTGC
GAGAAGTGGATGGAGATGAACTTGGTCCCTTTGATGGGGACACAGATCCACCTCCGGAAA
GTCCCACAGGAGCTGCTCCACAAAGTGCTGAGGTCCCCCAGGTTGTTTACTTTTAGTGAG
TTTCACCTTCTGAAAACACTACTTTTGTGGGTCTACTTGCAAATGAACAACAAAACACAG
ACCATTCCGGCGTATGAAACCATGGTGGCATTTTTCAGCAGCTTCCCCAAGACGTGCTCC
TTTCTGGAACAGGACGTAGGACAGACCTTGACGCCGCTCTTCCTTTGCCTGCGTCTGCAC
GGCATCATCAAAGGCAAGCATCTGGAGGAGCTAAGGCACATTAACTTCTTCCCTGAATCC
TGGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9929959|dbj|BAB12136.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9929959|dbj|BAB12136.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               90-208, - strand, RNAz p=0.590434
               

               
               90-200, - strand, RNAz p=0.867525

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-208, - strand, RNAz p=0.590434
               

               
               90-200, - strand, RNAz p=0.867525

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               90-223, gnl|bosTau2|chr26 (29566737-29566604)
               

               
               90-223, gnl|canFam2|chr28 (34971587-34971734)
               

               
               90-223, gnl|dasNov1|scaffold_30721 (7546-7429)
               

               
               90-223, gnl|echTel1|scaffold_191508 (4615-4762)
               

               
               90-223, gnl|hg17|chr10 (124048504-124048651)
               

               
               90-223, gnl|Hg17|chr10 (124048508-124048641)
               

               
               90-223, gnl|loxAfr1|scaffold_3028 (24329-24182)
               

               
               90-223, gnl|monDom2|scaffold_14 (37005875-37005712)
               

               
               90-223, gnl|oryCun1|scaffold_193812 (111934-112081)
               

               
               90-223, gnl|panTro1|chr8 (126374949-126375096)
               

               
               90-223, gnl|rheMac2|chr9 (121917302-121917449)
               

               
               90-223, gnl|rn3|chr1 (190267616-190267763)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-223, gnl|bosTau2|chr26 (29566737-29566604)
               

               
               90-223, gnl|canFam2|chr28 (34971587-34971734)
               

               
               90-223, gnl|dasNov1|scaffold_30721 (7546-7429)
               

               
               90-223, gnl|echTel1|scaffold_191508 (4615-4762)
               

               
               90-223, gnl|hg17|chr10 (124048504-124048651)
               

               
               90-223, gnl|Hg17|chr10 (124048508-124048641)
               

               
               90-223, gnl|loxAfr1|scaffold_3028 (24329-24182)
               

               
               90-223, gnl|monDom2|scaffold_14 (37005875-37005712)
               

               
               90-223, gnl|oryCun1|scaffold_193812 (111934-112081)
               

               
               90-223, gnl|panTro1|chr8 (126374949-126375096)
               

               
               90-223, gnl|rheMac2|chr9 (121917302-121917449)
               

               
               90-223, gnl|rn3|chr1 (190267616-190267763)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	90-208, - strand, RNAz p=0.590434
	90-200, - strand, RNAz p=0.867525

	90-223, gnl\|bosTau2\|chr26 (29566737-29566604)
	90-223, gnl\|canFam2\|chr28 (34971587-34971734)
	90-223, gnl\|dasNov1\|scaffold_30721 (7546-7429)
	90-223, gnl\|echTel1\|scaffold_191508 (4615-4762)
	90-223, gnl\|hg17\|chr10 (124048504-124048651)
	90-223, gnl\|Hg17\|chr10 (124048508-124048641)
	90-223, gnl\|loxAfr1\|scaffold_3028 (24329-24182)
	90-223, gnl\|monDom2\|scaffold_14 (37005875-37005712)
	90-223, gnl\|oryCun1\|scaffold_193812 (111934-112081)
	90-223, gnl\|panTro1\|chr8 (126374949-126375096)
	90-223, gnl\|rheMac2\|chr9 (121917302-121917449)
	90-223, gnl\|rn3\|chr1 (190267616-190267763)