Non-Coding RNA Search

rtes22_i20.y1

Sequence:


               
               AAATGGCAGGCAAAAAGCGAGAACTTCAGTTACAGGCAGTCATCGATAATCAAAGCCTGT
GGGATGAGATGTTGCAGAACAAAGGCCTGACAGTGATTGATGTGTACCAAGCCTGGTGTG
GACCTTGCAAAGCCATGCAAACTTTATTCAGAAAATTGAAAAATGAGCTGAATGAAGATG
AAATGCTGCATTTTGCTGTAGCAGAAGCTGACAGTATTGTAACTTTGCAGTCATTTAGAG
ATAAATGTGAACCTCTTTTTCTCTTCAGTGTTAATGGCAAAATTATTGCAAAAATCAAGG
GTGCAAATGCACCACTTGTTAATCAAAAGGTTATTACCCTGATCAATGAGGAGAGAAAAA
TCGCAGCAGGTGAAATGGTCCGCCCTCAGTATCATGAAGTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGGCAGGCAAAAAGCGAGAACTTCAGTTACAGGCAGTCATCGATAATCAAAGCCTGT
GGGATGAGATGTTGCAGAACAAAGGCCTGACAGTGATTGATGTGTACCAAGCCTGGTGTG
GACCTTGCAAAGCCATGCAAACTTTATTCAGAAAATTGAAAAATGAGCTGAATGAAGATG
AAATGCTGCATTTTGCTGTAGCAGAAGCTGACAGTATTGTAACTTTGCAGTCATTTAGAG
ATAAATGTGAACCTCTTTTTCTCTTCAGTGTTAATGGCAAAATTATTGCAAAAATCAAGG
GTGCAAATGCACCACTTGTTAATCAAAAGGTTATTACCCTGATCAATGAGGAGAGAAAAA
TCGCAGCAGGTGAAATGGTCCGCCCTCAGTATCATGAAGTTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               273-389, + strand, RNAz p=0.919847

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               273-389, + strand, RNAz p=0.919847

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               92-201, gnl|bosTau2|chr4 (19729811-19729920)
               

               
               92-201, gnl|Hg17|chr7 (37663469-37663578)
               

               
               92-201, gnl|Mm7|chr13 (19064074-19063965)
               


               
               273-389, gnl|bosTau2|chr4 (19740160-19740276)
               

               
               273-389, gnl|canFam2|chr18 (15062277-15062127)
               

               
               273-389, gnl|dasNov1|scaffold_22288 (12645-12488)
               

               
               273-389, gnl|echTel1|scaffold_194840 (796-646)
               

               
               273-389, gnl|galGal2|chr2 (45287374-45287185)
               

               
               273-389, gnl|hg17|chr7 (37674851-37675013)
               

               
               273-389, gnl|Hg17|chr7 (37674870-37674986)
               

               
               273-389, gnl|loxAfr1|scaffold_98423 (4656-4497)
               

               
               273-389, gnl|mm7|chr13 (19058365-19058221)
               

               
               273-389, gnl|Mm7|chr13 (19058344-19058228)
               

               
               273-389, gnl|oryCun1|scaffold_78321 (1220-1377)
               

               
               273-389, gnl|panTro1|chr6 (38873268-38873430)
               

               
               273-389, gnl|rheMac2|chr3 (88395939-88395777)
               

               
               273-389, gnl|rn3|chr17 (53045780-53045941)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-201, gnl|bosTau2|chr4 (19729811-19729920)
               

               
               92-201, gnl|Hg17|chr7 (37663469-37663578)
               

               
               92-201, gnl|Mm7|chr13 (19064074-19063965)
               


               
               273-389, gnl|bosTau2|chr4 (19740160-19740276)
               

               
               273-389, gnl|canFam2|chr18 (15062277-15062127)
               

               
               273-389, gnl|dasNov1|scaffold_22288 (12645-12488)
               

               
               273-389, gnl|echTel1|scaffold_194840 (796-646)
               

               
               273-389, gnl|galGal2|chr2 (45287374-45287185)
               

               
               273-389, gnl|hg17|chr7 (37674851-37675013)
               

               
               273-389, gnl|Hg17|chr7 (37674870-37674986)
               

               
               273-389, gnl|loxAfr1|scaffold_98423 (4656-4497)
               

               
               273-389, gnl|mm7|chr13 (19058365-19058221)
               

               
               273-389, gnl|Mm7|chr13 (19058344-19058228)
               

               
               273-389, gnl|oryCun1|scaffold_78321 (1220-1377)
               

               
               273-389, gnl|panTro1|chr6 (38873268-38873430)
               

               
               273-389, gnl|rheMac2|chr3 (88395939-88395777)
               

               
               273-389, gnl|rn3|chr17 (53045780-53045941)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	92-201, gnl\|bosTau2\|chr4 (19729811-19729920)
	92-201, gnl\|Hg17\|chr7 (37663469-37663578)
	92-201, gnl\|Mm7\|chr13 (19064074-19063965)

	273-389, gnl\|bosTau2\|chr4 (19740160-19740276)
	273-389, gnl\|canFam2\|chr18 (15062277-15062127)
	273-389, gnl\|dasNov1\|scaffold_22288 (12645-12488)
	273-389, gnl\|echTel1\|scaffold_194840 (796-646)
	273-389, gnl\|galGal2\|chr2 (45287374-45287185)
	273-389, gnl\|hg17\|chr7 (37674851-37675013)
	273-389, gnl\|Hg17\|chr7 (37674870-37674986)
	273-389, gnl\|loxAfr1\|scaffold_98423 (4656-4497)
	273-389, gnl\|mm7\|chr13 (19058365-19058221)
	273-389, gnl\|Mm7\|chr13 (19058344-19058228)
	273-389, gnl\|oryCun1\|scaffold_78321 (1220-1377)
	273-389, gnl\|panTro1\|chr6 (38873268-38873430)
	273-389, gnl\|rheMac2\|chr3 (88395939-88395777)
	273-389, gnl\|rn3\|chr17 (53045780-53045941)