Non-Coding RNA Search

rtes22_l17.y1

Sequence:


               
               GTTTCTAAGGAAATTGCAGCCCTGTCACACAGCCATGGCTGGAGCAGGCTGCCACTGAGC
CTTTGGGAGCAGCAAATCCTGGTGTGGGAAGCTGGAATTCTAGGAGCAGAAAGGCTACCT
TCAAAACTGCCCTCAAGGCCTGCAGTGAGATTAGTCCAGAACTTTGAAACACGAAGTATA
ATGGTTGAAAAGTGAAGTTTCCGGAGCTTGATACCCTGGGCTTGAATTCCAGCTCAGCCC
TTTTCTGTGTGACACTTGGCAGCTCATGGCCTGCCCAATGCATTCAATTTCACTGAGAGC
TGAACACTCCGCCAAGCTCTGGGATCATAAAACGTGCCCTCATGGAGTGACAGTACAATG
GGAAAGGAAATAGCACCCAATGTGTTATCTCTCCATCATCGGAGTTTCCTGAAGGGTTTT
TCACAAAACAGGAGAGTGCAGATGGAGGCATCGTAATCTACCTCCTCATTATCCTCTACA
TGCTCATGGCCTTGTCTATTGTCTGTGATGAGTACTTCCTACCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCTAAGGAAATTGCAGCCCTGTCACACAGCCATGGCTGGAGCAGGCTGCCACTGAGC
CTTTGGGAGCAGCAAATCCTGGTGTGGGAAGCTGGAATTCTAGGAGCAGAAAGGCTACCT
TCAAAACTGCCCTCAAGGCCTGCAGTGAGATTAGTCCAGAACTTTGAAACACGAAGTATA
ATGGTTGAAAAGTGAAGTTTCCGGAGCTTGATACCCTGGGCTTGAATTCCAGCTCAGCCC
TTTTCTGTGTGACACTTGGCAGCTCATGGCCTGCCCAATGCATTCAATTTCACTGAGAGC
TGAACACTCCGCCAAGCTCTGGGATCATAAAACGTGCCCTCATGGAGTGACAGTACAATG
GGAAAGGAAATAGCACCCAATGTGTTATCTCTCCATCATCGGAGTTTCCTGAAGGGTTTT
TCACAAAACAGGAGAGTGCAGATGGAGGCATCGTAATCTACCTCCTCATTATCCTCTACA
TGCTCATGGCCTTGTCTATTGTCTGTGATGAGTACTTCCTACCCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               365-483, + strand, RNAz p=0.578259

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               365-483, + strand, RNAz p=0.578259

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               365-526, gnl|bosTau2|chr10 (43085335-43085174)
               

               
               365-526, gnl|Hg17|chr15 (46201344-46201505)
               

               
               365-526, gnl|Mm7|chr2 (124809623-124809784)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               365-526, gnl|bosTau2|chr10 (43085335-43085174)
               

               
               365-526, gnl|Hg17|chr15 (46201344-46201505)
               

               
               365-526, gnl|Mm7|chr2 (124809623-124809784)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	365-526, gnl\|bosTau2\|chr10 (43085335-43085174)
	365-526, gnl\|Hg17\|chr15 (46201344-46201505)
	365-526, gnl\|Mm7\|chr2 (124809623-124809784)