Non-Coding RNA Search

rtes24_m14r1.y1

Sequence:


               
               AAAGAGTTCCTGGATGACCTCTTCGTCTTTATGCAAAAGAGGGGGACTCCCATCAACCGA
ATCCCCATCATGGCCAAGCAGATCTTGGACCTGTACATGCTGTATAAGCTGGTCACAGAG
AAGGGGGGGCTGGTGGAGATCATCAACAAGAAGATCTGGAGGGAGATCACCAAGGGCCTG
AACCTGCCCACATCCATCACCAGCGCGGCCTTCACCCTAAGGACCCATAAATTACAAGGA
TGAAAGAAGTACTGCGAGCATGAGTAGCATTGGGGAATGAGGGCCAGAAGAGAGTCTGTT
CTTTGGGAACACTAGACGTTGCTCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAGTTCCTGGATGACCTCTTCGTCTTTATGCAAAAGAGGGGGACTCCCATCAACCGA
ATCCCCATCATGGCCAAGCAGATCTTGGACCTGTACATGCTGTATAAGCTGGTCACAGAG
AAGGGGGGGCTGGTGGAGATCATCAACAAGAAGATCTGGAGGGAGATCACCAAGGGCCTG
AACCTGCCCACATCCATCACCAGCGCGGCCTTCACCCTAAGGACCCATAAATTACAAGGA
TGAAAGAAGTACTGCGAGCATGAGTAGCATTGGGGAATGAGGGCCAGAAGAGAGTCTGTT
CTTTGGGAACACTAGACGTTGCTCTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5TSS3_ANOGA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TSS3_ANOGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               110-227, - strand, RNAz p=0.599833

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-227, - strand, RNAz p=0.599833

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               43-227, gnl|bosTau2|chr21 (22775277-22775461)
               

               
               43-227, gnl|canFam2|chr30 (40683966-40684159)
               

               
               43-227, gnl|danRer3|chr11 (3982086-3981894)
               

               
               43-227, gnl|dasNov1|scaffold_72646 (287-94)
               

               
               43-227, gnl|echTel1|scaffold_305831 (7755-7948)
               

               
               43-227, gnl|fr1|chrUn (88654004-88653812)
               

               
               43-227, gnl|galGal2|chr10 (63846-63653)
               

               
               43-227, gnl|hg17|chr15 (72669212-72669405)
               

               
               43-227, gnl|Hg17|chr15 (72669213-72669397)
               

               
               43-227, gnl|loxAfr1|scaffold_1432 (96029-96222)
               

               
               43-227, gnl|mm7|chr9 (57825895-57825702)
               

               
               43-227, gnl|Mm7|chr9 (57825892-57825708)
               

               
               43-227, gnl|monDom2|scaffold_41 (3017470-3017277)
               

               
               43-227, gnl|oryCun1|scaffold_206605 (86339-86148)
               

               
               43-227, gnl|panTro1|chr16_random (21795278-21795471)
               

               
               43-227, gnl|rheMac2|chr7 (53388012-53388205)
               

               
               43-227, gnl|rn3|chr8 (61587704-61587511)
               

               
               43-227, gnl|tetNig1|chr13 (10518612-10518421)
               

               
               43-227, gnl|xenTro1|scaffold_295 (131571-131378)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-227, gnl|bosTau2|chr21 (22775277-22775461)
               

               
               43-227, gnl|canFam2|chr30 (40683966-40684159)
               

               
               43-227, gnl|danRer3|chr11 (3982086-3981894)
               

               
               43-227, gnl|dasNov1|scaffold_72646 (287-94)
               

               
               43-227, gnl|echTel1|scaffold_305831 (7755-7948)
               

               
               43-227, gnl|fr1|chrUn (88654004-88653812)
               

               
               43-227, gnl|galGal2|chr10 (63846-63653)
               

               
               43-227, gnl|hg17|chr15 (72669212-72669405)
               

               
               43-227, gnl|Hg17|chr15 (72669213-72669397)
               

               
               43-227, gnl|loxAfr1|scaffold_1432 (96029-96222)
               

               
               43-227, gnl|mm7|chr9 (57825895-57825702)
               

               
               43-227, gnl|Mm7|chr9 (57825892-57825708)
               

               
               43-227, gnl|monDom2|scaffold_41 (3017470-3017277)
               

               
               43-227, gnl|oryCun1|scaffold_206605 (86339-86148)
               

               
               43-227, gnl|panTro1|chr16_random (21795278-21795471)
               

               
               43-227, gnl|rheMac2|chr7 (53388012-53388205)
               

               
               43-227, gnl|rn3|chr8 (61587704-61587511)
               

               
               43-227, gnl|tetNig1|chr13 (10518612-10518421)
               

               
               43-227, gnl|xenTro1|scaffold_295 (131571-131378)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	43-227, gnl\|bosTau2\|chr21 (22775277-22775461)
	43-227, gnl\|canFam2\|chr30 (40683966-40684159)
	43-227, gnl\|danRer3\|chr11 (3982086-3981894)
	43-227, gnl\|dasNov1\|scaffold_72646 (287-94)
	43-227, gnl\|echTel1\|scaffold_305831 (7755-7948)
	43-227, gnl\|fr1\|chrUn (88654004-88653812)
	43-227, gnl\|galGal2\|chr10 (63846-63653)
	43-227, gnl\|hg17\|chr15 (72669212-72669405)
	43-227, gnl\|Hg17\|chr15 (72669213-72669397)
	43-227, gnl\|loxAfr1\|scaffold_1432 (96029-96222)
	43-227, gnl\|mm7\|chr9 (57825895-57825702)
	43-227, gnl\|Mm7\|chr9 (57825892-57825708)
	43-227, gnl\|monDom2\|scaffold_41 (3017470-3017277)
	43-227, gnl\|oryCun1\|scaffold_206605 (86339-86148)
	43-227, gnl\|panTro1\|chr16_random (21795278-21795471)
	43-227, gnl\|rheMac2\|chr7 (53388012-53388205)
	43-227, gnl\|rn3\|chr8 (61587704-61587511)
	43-227, gnl\|tetNig1\|chr13 (10518612-10518421)
	43-227, gnl\|xenTro1\|scaffold_295 (131571-131378)