Non-Coding RNA Search

rtes24_m20r1.y1

Sequence:


               
               GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTAAGCAGAGAGATCTTTAATGTT
GACTGGAAAAGAGACAACTGAGAAGACTACAGATGAACATGGCAACAGGAACCCTAAGTG
GCGCCTGGAAGATAGGGGACAGGGTGGCTATCGCAGCACACCGGCCACTTTCAGAGGCCA
GAGTACTTTCAGTGTACAGAGAAGAGCAAAGCGGGACAAAGCTCTTCTCCATTCAATGTG
CAGAGAATTGGGCATGCAAATTAACCATGACAGTTCTTGCCAACAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTAAGCAGAGAGATCTTTAATGTT
GACTGGAAAAGAGACAACTGAGAAGACTACAGATGAACATGGCAACAGGAACCCTAAGTG
GCGCCTGGAAGATAGGGGACAGGGTGGCTATCGCAGCACACCGGCCACTTTCAGAGGCCA
GAGTACTTTCAGTGTACAGAGAAGAGCAAAGCGGGACAAAGCTCTTCTCCATTCAATGTG
CAGAGAATTGGGCATGCAAATTAACCATGACAGTTCTTGCCAACAGCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               108-251, - strand, RNAz p=0.8622
               

               
               128-244, - strand, RNAz p=0.954787

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               108-251, - strand, RNAz p=0.8622
               

               
               128-244, - strand, RNAz p=0.954787

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               29-289, gnl|bosTau2|chr18 (30080192-30080457)
               

               
               29-289, gnl|canFam2|chr1 (124632187-124631962)
               

               
               29-289, gnl|hg17|chr19 (34998109-34998341)
               

               
               29-289, gnl|Hg17|chr19 (34998918-34998120)
               

               
               29-289, gnl|loxAfr1|scaffold_61566 (6257-6023)
               

               
               29-289, gnl|mm7|chr7 (34997036-34996854)
               

               
               29-289, gnl|oryCun1|scaffold_202096 (11070-10854)
               

               
               29-289, gnl|panTro1|chr20 (31486012-31486244)
               

               
               29-289, gnl|rheMac2|chr19 (36257879-36258110)
               

               
               29-289, gnl|rn3|chr1 (90651892-90651715)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-289, gnl|bosTau2|chr18 (30080192-30080457)
               

               
               29-289, gnl|canFam2|chr1 (124632187-124631962)
               

               
               29-289, gnl|hg17|chr19 (34998109-34998341)
               

               
               29-289, gnl|Hg17|chr19 (34998918-34998120)
               

               
               29-289, gnl|loxAfr1|scaffold_61566 (6257-6023)
               

               
               29-289, gnl|mm7|chr7 (34997036-34996854)
               

               
               29-289, gnl|oryCun1|scaffold_202096 (11070-10854)
               

               
               29-289, gnl|panTro1|chr20 (31486012-31486244)
               

               
               29-289, gnl|rheMac2|chr19 (36257879-36258110)
               

               
               29-289, gnl|rn3|chr1 (90651892-90651715)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	108-251, - strand, RNAz p=0.8622
	128-244, - strand, RNAz p=0.954787

	29-289, gnl\|bosTau2\|chr18 (30080192-30080457)
	29-289, gnl\|canFam2\|chr1 (124632187-124631962)
	29-289, gnl\|hg17\|chr19 (34998109-34998341)
	29-289, gnl\|Hg17\|chr19 (34998918-34998120)
	29-289, gnl\|loxAfr1\|scaffold_61566 (6257-6023)
	29-289, gnl\|mm7\|chr7 (34997036-34996854)
	29-289, gnl\|oryCun1\|scaffold_202096 (11070-10854)
	29-289, gnl\|panTro1\|chr20 (31486012-31486244)
	29-289, gnl\|rheMac2\|chr19 (36257879-36258110)
	29-289, gnl\|rn3\|chr1 (90651892-90651715)