rtes26_d8.y1
|
ACTCACAAGAACTTTCTAAAATGTACACCTGCTCAAATCAATAGGATGTCTAATTTTTTC
AGTGGTCTCTTGCTGATCCATTCAGAATTGAGTCGCCTGAGTCTATCTTCTCCCCAGGTC
AGGCTCCCCAGGCTTTCTTGGCCCCCTGACCCCTCCTTCCTCTCCCAGGACTGTATTTCC
CCTGCCTCTCACTTGCCTCCCAGCAACCTAAGCAGAACAATACTGGAAGTGGAACTGGCA
CTCTGACAAAAAGGAGAGCAATTGGAAAGAAAACTTTACTCATCAAGAAAGAGCCCTGTG
GCAGGAATTCAAAGGGCCAAGTTCTGCCCTCAGCTGTGAGTCATGACTCCCACGAAAGCC
AGGAGCTCATATGTGATTTAAATGTGCAACCAGTGATGAGAATTACTGAACCAACAAAAG
AAGCTGACCATGAGGAGAAAGAGTCATAACCCTCAGCAGTGCCAGAAGAGACATACACAC
ACACAGGCTGAATTCCTCGCCAGACTTTCTTTCACACTGTTCTGTTGACAAATTCTTTTT
TCAATTACCTGAGATATTCCAGTGTCTTTCCAATAAATCCTCCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACTCACAAGAACTTTCTAAAATGTACACCTGCTCAAATCAATAGGATGTCTAATTTTTTC
AGTGGTCTCTTGCTGATCCATTCAGAATTGAGTCGCCTGAGTCTATCTTCTCCCCAGGTC
AGGCTCCCCAGGCTTTCTTGGCCCCCTGACCCCTCCTTCCTCTCCCAGGACTGTATTTCC
CCTGCCTCTCACTTGCCTCCCAGCAACCTAAGCAGAACAATACTGGAAGTGGAACTGGCA
CTCTGACAAAAAGGAGAGCAATTGGAAAGAAAACTTTACTCATCAAGAAAGAGCCCTGTG
GCAGGAATTCAAAGGGCCAAGTTCTGCCCTCAGCTGTGAGTCATGACTCCCACGAAAGCC
AGGAGCTCATATGTGATTTAAATGTGCAACCAGTGATGAGAATTACTGAACCAACAAAAG
AAGCTGACCATGAGGAGAAAGAGTCATAACCCTCAGCAGTGCCAGAAGAGACATACACAC
ACACAGGCTGAATTCCTCGCCAGACTTTCTTTCACACTGTTCTGTTGACAAATTCTTTTT
TCAATTACCTGAGATATTCCAGTGTCTTTCCAATAAATCCTCCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
137-254, - strand, RNAmicro p=0.999794 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
137-254, - strand, RNAmicro p=0.999794 |
|
92-293, gnl|bosTau2|chr2 (35457318-35457118) |
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92-293, gnl|canFam2|chr19 (49402642-49403191) |
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92-293, gnl|echTel1|scaffold_296448 (35636-36166) |
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92-293, gnl|galGal2|chr7 (33964019-33964606) |
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92-293, gnl|hg17|chr2 (144941715-144942250) |
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92-293, gnl|Hg17|chr2 (144942036-144941845) |
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92-293, gnl|loxAfr1|scaffold_5376 (98311-98856) |
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92-293, gnl|mm7|chr2 (44960348-44960960) |
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92-293, gnl|Mm7|chr2 (44960660-44960478) |
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92-293, gnl|monDom2|scaffold_2 (33173336-33173928) |
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92-293, gnl|oryCun1|scaffold_200172 (152962-153515) |
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92-293, gnl|panTro1|chr13 (33979910-33980445) |
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92-293, gnl|rheMac2|chr12 (7881483-7882024) |
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92-293, gnl|rn3|chr3 (25374922-25375530) |
| |
|
373-584, gnl|bosTau2|chr2 (35452579-35452372) |
|
373-584, gnl|Hg17|chr2 (144939350-144939103) |
|
373-584, gnl|Mm7|chr2 (44958271-44957931) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
92-293, gnl|bosTau2|chr2 (35457318-35457118) |
|
92-293, gnl|canFam2|chr19 (49402642-49403191) |
|
92-293, gnl|echTel1|scaffold_296448 (35636-36166) |
|
92-293, gnl|galGal2|chr7 (33964019-33964606) |
|
92-293, gnl|hg17|chr2 (144941715-144942250) |
|
92-293, gnl|Hg17|chr2 (144942036-144941845) |
|
92-293, gnl|loxAfr1|scaffold_5376 (98311-98856) |
|
92-293, gnl|mm7|chr2 (44960348-44960960) |
|
92-293, gnl|Mm7|chr2 (44960660-44960478) |
|
92-293, gnl|monDom2|scaffold_2 (33173336-33173928) |
|
92-293, gnl|oryCun1|scaffold_200172 (152962-153515) |
|
92-293, gnl|panTro1|chr13 (33979910-33980445) |
|
92-293, gnl|rheMac2|chr12 (7881483-7882024) |
|
92-293, gnl|rn3|chr3 (25374922-25375530) |
| |
|
373-584, gnl|bosTau2|chr2 (35452579-35452372) |
|
373-584, gnl|Hg17|chr2 (144939350-144939103) |
|
373-584, gnl|Mm7|chr2 (44958271-44957931) |
