Non-Coding RNA Search

rtes27_i16.y1

Sequence:


               
               GGCGACCGCCGCCACTGCTTCGCAGCGTGAAGAGCTTCACCGGAGCGCTGTGCGACTTCC
CGGACGAGCGCCTGCTTTCCTGATATCTGCAAAATGGCTGATAATTTGGATGAATTTATT
GAAGAGCGAAAAGCCAAATTGGCCAAAGACAAAGCAGAATTGGAAAGTGATCCACCTTAC
ATGGAAATGAAGGGAAAGGCATCAGAGAAACTTTCTGAAAATAGTAAAATATTAATCTCC
ATGGCTAAGGAAAACATACCACCAAACAGTCAACAGACCAGGGGTTCTTTAGAGCAGGAA
GAAGACAAAAATTCTGCTTTTGCCACTTCTATTCAACATTCATTGAAAGTTCCAGCCAGT
ACAATGAAGTAATAAAAGAAATGAAAGCTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGACCGCCGCCACTGCTTCGCAGCGTGAAGAGCTTCACCGGAGCGCTGTGCGACTTCC
CGGACGAGCGCCTGCTTTCCTGATATCTGCAAAATGGCTGATAATTTGGATGAATTTATT
GAAGAGCGAAAAGCCAAATTGGCCAAAGACAAAGCAGAATTGGAAAGTGATCCACCTTAC
ATGGAAATGAAGGGAAAGGCATCAGAGAAACTTTCTGAAAATAGTAAAATATTAATCTCC
ATGGCTAAGGAAAACATACCACCAAACAGTCAACAGACCAGGGGTTCTTTAGAGCAGGAA
GAAGACAAAAATTCTGCTTTTGCCACTTCTATTCAACATTCATTGAAAGTTCCAGCCAGT
ACAATGAAGTAATAAAAGAAATGAAAGCTATC

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               84-198, gnl|bosTau2|chr14 (18010606-18010492)
               

               
               84-198, gnl|canFam2|chr29 (19592228-19592375)
               

               
               84-198, gnl|dasNov1|scaffold_16983 (20417-20560)
               

               
               84-198, gnl|echTel1|scaffold_321907 (713-567)
               

               
               84-198, gnl|galGal2|chrUn (160232079-160231888)
               

               
               84-198, gnl|hg17|chr8 (68149031-68149177)
               

               
               84-198, gnl|Hg17|chr8 (68149032-68149146)
               

               
               84-198, gnl|mm7|chr1 (10187804-10187950)
               

               
               84-198, gnl|Mm7|chr1 (10187805-10187919)
               

               
               84-198, gnl|monDom2|scaffold_4 (94418999-94418824)
               

               
               84-198, gnl|panTro1|chr7 (70174033-70174179)
               

               
               84-198, gnl|rheMac2|chr8 (69702295-69702441)
               

               
               84-198, gnl|rn3|chr5 (8697783-8697639)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-198, gnl|bosTau2|chr14 (18010606-18010492)
               

               
               84-198, gnl|canFam2|chr29 (19592228-19592375)
               

               
               84-198, gnl|dasNov1|scaffold_16983 (20417-20560)
               

               
               84-198, gnl|echTel1|scaffold_321907 (713-567)
               

               
               84-198, gnl|galGal2|chrUn (160232079-160231888)
               

               
               84-198, gnl|hg17|chr8 (68149031-68149177)
               

               
               84-198, gnl|Hg17|chr8 (68149032-68149146)
               

               
               84-198, gnl|mm7|chr1 (10187804-10187950)
               

               
               84-198, gnl|Mm7|chr1 (10187805-10187919)
               

               
               84-198, gnl|monDom2|scaffold_4 (94418999-94418824)
               

               
               84-198, gnl|panTro1|chr7 (70174033-70174179)
               

               
               84-198, gnl|rheMac2|chr8 (69702295-69702441)
               

               
               84-198, gnl|rn3|chr5 (8697783-8697639)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	84-198, gnl\|bosTau2\|chr14 (18010606-18010492)
	84-198, gnl\|canFam2\|chr29 (19592228-19592375)
	84-198, gnl\|dasNov1\|scaffold_16983 (20417-20560)
	84-198, gnl\|echTel1\|scaffold_321907 (713-567)
	84-198, gnl\|galGal2\|chrUn (160232079-160231888)
	84-198, gnl\|hg17\|chr8 (68149031-68149177)
	84-198, gnl\|Hg17\|chr8 (68149032-68149146)
	84-198, gnl\|mm7\|chr1 (10187804-10187950)
	84-198, gnl\|Mm7\|chr1 (10187805-10187919)
	84-198, gnl\|monDom2\|scaffold_4 (94418999-94418824)
	84-198, gnl\|panTro1\|chr7 (70174033-70174179)
	84-198, gnl\|rheMac2\|chr8 (69702295-69702441)
	84-198, gnl\|rn3\|chr5 (8697783-8697639)