Non-Coding RNA Search

rtes27_j1.y1

Sequence:


               
               GCTCTGATGAATCTTCACAACAACAGGGCAGGCAGGCTGGCAGTGAGAGCCACCATGAAA
AGGACCTGCAAATGTCATGGCATCTCTGGGAGCTGTAGCATCCAGACATGCTGGCTGCAG
CTAGCTAACTTCCGGGAGATGGGCAACTACCTTAAGGCCAAGTATGACCAGGCACTAAAA
ATTGAGATGGATAAGCGGCGGCTAAGGGCTGGGAACAGTGCCGAGGGCCACTGGGTACCT
GCTGAGGCCTTCCTTCCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTGATGAATCTTCACAACAACAGGGCAGGCAGGCTGGCAGTGAGAGCCACCATGAAA
AGGACCTGCAAATGTCATGGCATCTCTGGGAGCTGTAGCATCCAGACATGCTGGCTGCAG
CTAGCTAACTTCCGGGAGATGGGCAACTACCTTAAGGCCAAGTATGACCAGGCACTAAAA
ATTGAGATGGATAAGCGGCGGCTAAGGGCTGGGAACAGTGCCGAGGGCCACTGGGTACCT
GCTGAGGCCTTCCTTCCTAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8MPL7_PLADU

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8MPL7_PLADU

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               39-197, - strand, RNAz p=0.830575
               

               
               79-192, + strand, RNAz p=0.781116

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-197, - strand, RNAz p=0.830575
               

               
               79-192, + strand, RNAz p=0.781116

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               39-260, gnl|bosTau2|chr7 (34640295-34640516)
               

               
               39-260, gnl|canFam2|chr11 (28766053-28766248)
               

               
               39-260, gnl|danRer3|chr14 (59779614-59779807)
               

               
               39-260, gnl|dasNov1|scaffold_58280 (2617-2810)
               

               
               39-260, gnl|echTel1|scaffold_211363 (1851-1651)
               

               
               39-260, gnl|fr1|chrUn (159827213-159827041)
               

               
               39-260, gnl|galGal2|chr13 (13121335-13121138)
               

               
               39-260, gnl|hg17|chr5 (137454099-137454296)
               

               
               39-260, gnl|Hg17|chr5 (137454115-137454336)
               

               
               39-260, gnl|loxAfr1|scaffold_2403 (66843-66645)
               

               
               39-260, gnl|mm7|chr18 (34922521-34922739)
               

               
               39-260, gnl|Mm7|chr18 (34922558-34922779)
               

               
               39-260, gnl|monDom2|scaffold_6 (71423498-71423315)
               

               
               39-260, gnl|oryCun1|scaffold_171646 (11214-11411)
               

               
               39-260, gnl|panTro1|chr4 (144056766-144056963)
               

               
               39-260, gnl|rheMac2|chr6 (134491229-134491426)
               

               
               39-260, gnl|rn3|chr18 (27038242-27038447)
               

               
               39-260, gnl|tetNig1|chr17 (5944347-5944175)
               

               
               39-260, gnl|xenTro1|scaffold_15 (27890-28081)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-260, gnl|bosTau2|chr7 (34640295-34640516)
               

               
               39-260, gnl|canFam2|chr11 (28766053-28766248)
               

               
               39-260, gnl|danRer3|chr14 (59779614-59779807)
               

               
               39-260, gnl|dasNov1|scaffold_58280 (2617-2810)
               

               
               39-260, gnl|echTel1|scaffold_211363 (1851-1651)
               

               
               39-260, gnl|fr1|chrUn (159827213-159827041)
               

               
               39-260, gnl|galGal2|chr13 (13121335-13121138)
               

               
               39-260, gnl|hg17|chr5 (137454099-137454296)
               

               
               39-260, gnl|Hg17|chr5 (137454115-137454336)
               

               
               39-260, gnl|loxAfr1|scaffold_2403 (66843-66645)
               

               
               39-260, gnl|mm7|chr18 (34922521-34922739)
               

               
               39-260, gnl|Mm7|chr18 (34922558-34922779)
               

               
               39-260, gnl|monDom2|scaffold_6 (71423498-71423315)
               

               
               39-260, gnl|oryCun1|scaffold_171646 (11214-11411)
               

               
               39-260, gnl|panTro1|chr4 (144056766-144056963)
               

               
               39-260, gnl|rheMac2|chr6 (134491229-134491426)
               

               
               39-260, gnl|rn3|chr18 (27038242-27038447)
               

               
               39-260, gnl|tetNig1|chr17 (5944347-5944175)
               

               
               39-260, gnl|xenTro1|scaffold_15 (27890-28081)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	39-197, - strand, RNAz p=0.830575
	79-192, + strand, RNAz p=0.781116

	39-260, gnl\|bosTau2\|chr7 (34640295-34640516)
	39-260, gnl\|canFam2\|chr11 (28766053-28766248)
	39-260, gnl\|danRer3\|chr14 (59779614-59779807)
	39-260, gnl\|dasNov1\|scaffold_58280 (2617-2810)
	39-260, gnl\|echTel1\|scaffold_211363 (1851-1651)
	39-260, gnl\|fr1\|chrUn (159827213-159827041)
	39-260, gnl\|galGal2\|chr13 (13121335-13121138)
	39-260, gnl\|hg17\|chr5 (137454099-137454296)
	39-260, gnl\|Hg17\|chr5 (137454115-137454336)
	39-260, gnl\|loxAfr1\|scaffold_2403 (66843-66645)
	39-260, gnl\|mm7\|chr18 (34922521-34922739)
	39-260, gnl\|Mm7\|chr18 (34922558-34922779)
	39-260, gnl\|monDom2\|scaffold_6 (71423498-71423315)
	39-260, gnl\|oryCun1\|scaffold_171646 (11214-11411)
	39-260, gnl\|panTro1\|chr4 (144056766-144056963)
	39-260, gnl\|rheMac2\|chr6 (134491229-134491426)
	39-260, gnl\|rn3\|chr18 (27038242-27038447)
	39-260, gnl\|tetNig1\|chr17 (5944347-5944175)
	39-260, gnl\|xenTro1\|scaffold_15 (27890-28081)