Non-Coding RNA Search

rtes28_g16.y1

Sequence:


               
               TCCAAAATAGGTTTCCCATCACTAATCCAGAAGTGGTAAAGATCCAGGCCTGGTGGCGGG
GCACCCTGGTGCGCAGGACACTGCTGCATGCAGCACTCAGAGTGTGGATCATTCAGGGCT
GGTGGAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAAAATAGGTTTCCCATCACTAATCCAGAAGTGGTAAAGATCCAGGCCTGGTGGCGGG
GCACCCTGGTGCGCAGGACACTGCTGCATGCAGCACTCAGAGTGTGGATCATTCAGGGCT
GGTGGAGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               19-129, + strand, RNAz p=0.89211

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-129, + strand, RNAz p=0.89211

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-129, gnl|bosTau2|chr22 (36438803-36438676)
               

               
               2-129, gnl|canFam2|chr20 (40794498-40794227)
               

               
               2-129, gnl|dasNov1|scaffold_11113 (41990-41719)
               

               
               2-129, gnl|echTel1|scaffold_25552 (4369-4100)
               

               
               2-129, gnl|hg17|chr3 (51904091-51904362)
               

               
               2-129, gnl|Hg17|chr3 (51904381-51904254)
               

               
               2-129, gnl|loxAfr1|scaffold_531 (143034-142763)
               

               
               2-129, gnl|mm7|chr9 (106231542-106231269)
               

               
               2-129, gnl|Mm7|chr9 (106231255-106231377)
               

               
               2-129, gnl|monDom2|scaffold_5 (71808225-71808496)
               

               
               2-129, gnl|oryCun1|scaffold_145190 (9293-9564)
               

               
               2-129, gnl|panTro1|chr2 (53513723-53513994)
               

               
               2-129, gnl|rheMac2|chr2 (84501952-84501681)
               

               
               2-129, gnl|rn3|chr8 (111657386-111657113)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-129, gnl|bosTau2|chr22 (36438803-36438676)
               

               
               2-129, gnl|canFam2|chr20 (40794498-40794227)
               

               
               2-129, gnl|dasNov1|scaffold_11113 (41990-41719)
               

               
               2-129, gnl|echTel1|scaffold_25552 (4369-4100)
               

               
               2-129, gnl|hg17|chr3 (51904091-51904362)
               

               
               2-129, gnl|Hg17|chr3 (51904381-51904254)
               

               
               2-129, gnl|loxAfr1|scaffold_531 (143034-142763)
               

               
               2-129, gnl|mm7|chr9 (106231542-106231269)
               

               
               2-129, gnl|Mm7|chr9 (106231255-106231377)
               

               
               2-129, gnl|monDom2|scaffold_5 (71808225-71808496)
               

               
               2-129, gnl|oryCun1|scaffold_145190 (9293-9564)
               

               
               2-129, gnl|panTro1|chr2 (53513723-53513994)
               

               
               2-129, gnl|rheMac2|chr2 (84501952-84501681)
               

               
               2-129, gnl|rn3|chr8 (111657386-111657113)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	2-129, gnl\|bosTau2\|chr22 (36438803-36438676)
	2-129, gnl\|canFam2\|chr20 (40794498-40794227)
	2-129, gnl\|dasNov1\|scaffold_11113 (41990-41719)
	2-129, gnl\|echTel1\|scaffold_25552 (4369-4100)
	2-129, gnl\|hg17\|chr3 (51904091-51904362)
	2-129, gnl\|Hg17\|chr3 (51904381-51904254)
	2-129, gnl\|loxAfr1\|scaffold_531 (143034-142763)
	2-129, gnl\|mm7\|chr9 (106231542-106231269)
	2-129, gnl\|Mm7\|chr9 (106231255-106231377)
	2-129, gnl\|monDom2\|scaffold_5 (71808225-71808496)
	2-129, gnl\|oryCun1\|scaffold_145190 (9293-9564)
	2-129, gnl\|panTro1\|chr2 (53513723-53513994)
	2-129, gnl\|rheMac2\|chr2 (84501952-84501681)
	2-129, gnl\|rn3\|chr8 (111657386-111657113)