Non-Coding RNA Search

rtes28_h7.y1

Sequence:


               
               AGGAAATGACGTCCCGCCTCGCGCCTGGCGGTTGCCTAGAGACGGGGTGAAACAGTCCAG
CCCCTGGGAGGAAAGGGGTGAAAGTGGGTACGGTAGGGGTGGGAGGAGCTCTAGAGGCAA
TGAGAGTGCCCTCACTTCTCCAGCCGGGGGTGAGAGGTGCACCTCAAAAACTGTGCTCTT
CCGCCACCAGGATCGCTTTGAAGCATCTAACCAGCTAGCAAATTCACAGTTGTAGGGGAA
AATAACCAACTTTTTGCCTCTAAAATACTAATTGCTTCAGGCTCAGTTTTCTAGCTTAAA
ACCTTGGCTCCCCTCTTGCACGCACTAATATTCAAGTTCATGTGTTCATGTGGACGACTG
TTGGGCACCTACTGTGTGCAAGAGATCTATCTATTCAAGCATATACTGGTGGCTGCAGGA
GCCAACTCCAGTGCAGGGATAGATAAGACTGAACCCCTGCTGGGTCTCCAGTAGGTGGGG
AAAACGTTTTCACAAATATAAAGCTGACACAACACATACACACACCTGCATATAAAGTAT
AAAACTGAGGATATCCGAATTAGATGGGTGGATTGTATCAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAATGACGTCCCGCCTCGCGCCTGGCGGTTGCCTAGAGACGGGGTGAAACAGTCCAG
CCCCTGGGAGGAAAGGGGTGAAAGTGGGTACGGTAGGGGTGGGAGGAGCTCTAGAGGCAA
TGAGAGTGCCCTCACTTCTCCAGCCGGGGGTGAGAGGTGCACCTCAAAAACTGTGCTCTT
CCGCCACCAGGATCGCTTTGAAGCATCTAACCAGCTAGCAAATTCACAGTTGTAGGGGAA
AATAACCAACTTTTTGCCTCTAAAATACTAATTGCTTCAGGCTCAGTTTTCTAGCTTAAA
ACCTTGGCTCCCCTCTTGCACGCACTAATATTCAAGTTCATGTGTTCATGTGGACGACTG
TTGGGCACCTACTGTGTGCAAGAGATCTATCTATTCAAGCATATACTGGTGGCTGCAGGA
GCCAACTCCAGTGCAGGGATAGATAAGACTGAACCCCTGCTGGGTCTCCAGTAGGTGGGG
AAAACGTTTTCACAAATATAAAGCTGACACAACACATACACACACCTGCATATAAAGTAT
AAAACTGAGGATATCCGAATTAGATGGGTGGATTGTATCAATGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               38-148, + strand, RNAz p=0.794621

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-148, + strand, RNAz p=0.794621

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-544, gnl|bosTau2|chr8 (57645748-57645189)
               

               
               1-544, gnl|Hg17|chr9 (114347401-114347976)
               

               
               1-544, gnl|Mm7|chr4 (62929805-62930386)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-544, gnl|bosTau2|chr8 (57645748-57645189)
               

               
               1-544, gnl|Hg17|chr9 (114347401-114347976)
               

               
               1-544, gnl|Mm7|chr4 (62929805-62930386)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.207814)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	1-544, gnl\|bosTau2\|chr8 (57645748-57645189)
	1-544, gnl\|Hg17\|chr9 (114347401-114347976)
	1-544, gnl\|Mm7\|chr4 (62929805-62930386)