Non-Coding RNA Search

rtes29_a5.y1

Sequence:


               
               AGATGGTAGAAACTACCAAAGATTTTTTATTTAAGAGTATTTCTCATCCATGGAATCTAG
CTAAAAGACTCTATCAGTTACTGAAACATCCCCTCAAGCTAACTGCTTTCAGAAAGACCT
GTATGACTAGCACAAGATGGTGCCACTAGCATATTATGATCAACACTTTGTGCCACTAGA
ACAATCTTACCAACTGGCCACAACCAGCTCATTAACACATCAATACACAGATGAAAAACT
AAATCATCCCAATAGCCAATCTGTGATCAGAGTACAATCTCATAGTAATAACCTTGCAGT
GCCTCTGCTAAACGCTAACCAGAAGGTGCAGAAATCCTCACTATTGCCCTCTGCAAAGTC
TCAGGACACAATTTCTGGGGACTTCTATAACAGGGTTCTGAAATCACCATTATCTCACTG
CAAACGTCAGGCCACGCCTTCACTACACCTCCGTCAGAGAACTTCAGCGTGGACTAATAA
GAGAACCCTAAGCTCGCCTTTGTCCAACTCCAAACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGGTAGAAACTACCAAAGATTTTTTATTTAAGAGTATTTCTCATCCATGGAATCTAG
CTAAAAGACTCTATCAGTTACTGAAACATCCCCTCAAGCTAACTGCTTTCAGAAAGACCT
GTATGACTAGCACAAGATGGTGCCACTAGCATATTATGATCAACACTTTGTGCCACTAGA
ACAATCTTACCAACTGGCCACAACCAGCTCATTAACACATCAATACACAGATGAAAAACT
AAATCATCCCAATAGCCAATCTGTGATCAGAGTACAATCTCATAGTAATAACCTTGCAGT
GCCTCTGCTAAACGCTAACCAGAAGGTGCAGAAATCCTCACTATTGCCCTCTGCAAAGTC
TCAGGACACAATTTCTGGGGACTTCTATAACAGGGTTCTGAAATCACCATTATCTCACTG
CAAACGTCAGGCCACGCCTTCACTACACCTCCGTCAGAGAACTTCAGCGTGGACTAATAA
GAGAACCCTAAGCTCGCCTTTGTCCAACTCCAAACCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               181-397, - strand, RNAz p=0.968739

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               181-397, - strand, RNAz p=0.968739

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-517, gnl|bosTau2|chr1 (20784863-20784348)
               

               
               1-517, gnl|canFam2|chr33 (3281725-3282304)
               

               
               1-517, gnl|dasNov1|scaffold_22046 (42943-43546)
               

               
               1-517, gnl|echTel1|scaffold_295453 (5312-4712)
               

               
               1-517, gnl|hg17|chr3 (88596857-88597426)
               

               
               1-517, gnl|Hg17|chr3 (88597076-88597578)
               

               
               1-517, gnl|loxAfr1|scaffold_17242 (2236-2835)
               

               
               1-517, gnl|mm7|chr16 (64429200-64428645)
               

               
               1-517, gnl|Mm7|chr16 (64428956-64428496)
               

               
               1-517, gnl|monDom2|scaffold_25 (13880359-13879853)
               

               
               1-517, gnl|panTro1|chr2 (90984776-90985345)
               

               
               1-517, gnl|rheMac2|chr2 (12700670-12701241)
               

               
               1-517, gnl|rn3|chr11 (1722998-1722421)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-517, gnl|bosTau2|chr1 (20784863-20784348)
               

               
               1-517, gnl|canFam2|chr33 (3281725-3282304)
               

               
               1-517, gnl|dasNov1|scaffold_22046 (42943-43546)
               

               
               1-517, gnl|echTel1|scaffold_295453 (5312-4712)
               

               
               1-517, gnl|hg17|chr3 (88596857-88597426)
               

               
               1-517, gnl|Hg17|chr3 (88597076-88597578)
               

               
               1-517, gnl|loxAfr1|scaffold_17242 (2236-2835)
               

               
               1-517, gnl|mm7|chr16 (64429200-64428645)
               

               
               1-517, gnl|Mm7|chr16 (64428956-64428496)
               

               
               1-517, gnl|monDom2|scaffold_25 (13880359-13879853)
               

               
               1-517, gnl|panTro1|chr2 (90984776-90985345)
               

               
               1-517, gnl|rheMac2|chr2 (12700670-12701241)
               

               
               1-517, gnl|rn3|chr11 (1722998-1722421)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	1-517, gnl\|bosTau2\|chr1 (20784863-20784348)
	1-517, gnl\|canFam2\|chr33 (3281725-3282304)
	1-517, gnl\|dasNov1\|scaffold_22046 (42943-43546)
	1-517, gnl\|echTel1\|scaffold_295453 (5312-4712)
	1-517, gnl\|hg17\|chr3 (88596857-88597426)
	1-517, gnl\|Hg17\|chr3 (88597076-88597578)
	1-517, gnl\|loxAfr1\|scaffold_17242 (2236-2835)
	1-517, gnl\|mm7\|chr16 (64429200-64428645)
	1-517, gnl\|Mm7\|chr16 (64428956-64428496)
	1-517, gnl\|monDom2\|scaffold_25 (13880359-13879853)
	1-517, gnl\|panTro1\|chr2 (90984776-90985345)
	1-517, gnl\|rheMac2\|chr2 (12700670-12701241)
	1-517, gnl\|rn3\|chr11 (1722998-1722421)