Non-Coding RNA Search

rtes29_m17.y1

Sequence:


               
               CAGCCCTGTAGAAATATTTAAAACGTTATTCTTTAAAGAATATTCATTGTACTTGAGACG
GCTTGGGAAAGCTGTGCTCCTAGCAAAGGGAAGAATGATAGCCACCGATAGAGTTACACT
GGAGGGAAGGGACTTGCAGGGCTCACCCTCATTAACGTTAATGGATAGTTCCACCCACAC
ACTAGTGGGGAGAAAACAATCTGTTGTGAATTGAATGATTTTCAGTCCTGATGGTTGCTA
AATTAATATCTTCTGACAAAGTCAAGTTCTGCTCAAATATACCACAGGGAAACTACCATC
TGCTCACAAGTCACTTTTTAGAGTAGATTCTCCAGGGTTCCTCCTAGCCTGCAGATGCTG
CATCAGTCTGGAAAGTAATTTCTAGGAGGCTAGTTTGTGATCCTGGATCTTTCTACTGTT
CTCACAACTACTGCTCTCAAGATCTCCAATTAAAAAAGTGAAACGTACGCATCCCCTTTC
TTCCTTCCTCCTTCCTTTCTCTCTCGCCCCCTCCCTTTCTTCCTTCTTATAGTTACATAC
TAAGTTTATCAAACTCTGAACTTGGAACCGGATCTTTTTTTGCCAAATTTATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCCTGTAGAAATATTTAAAACGTTATTCTTTAAAGAATATTCATTGTACTTGAGACG
GCTTGGGAAAGCTGTGCTCCTAGCAAAGGGAAGAATGATAGCCACCGATAGAGTTACACT
GGAGGGAAGGGACTTGCAGGGCTCACCCTCATTAACGTTAATGGATAGTTCCACCCACAC
ACTAGTGGGGAGAAAACAATCTGTTGTGAATTGAATGATTTTCAGTCCTGATGGTTGCTA
AATTAATATCTTCTGACAAAGTCAAGTTCTGCTCAAATATACCACAGGGAAACTACCATC
TGCTCACAAGTCACTTTTTAGAGTAGATTCTCCAGGGTTCCTCCTAGCCTGCAGATGCTG
CATCAGTCTGGAAAGTAATTTCTAGGAGGCTAGTTTGTGATCCTGGATCTTTCTACTGTT
CTCACAACTACTGCTCTCAAGATCTCCAATTAAAAAAGTGAAACGTACGCATCCCCTTTC
TTCCTTCCTCCTTCCTTTCTCTCTCGCCCCCTCCCTTTCTTCCTTCTTATAGTTACATAC
TAAGTTTATCAAACTCTGAACTTGGAACCGGATCTTTTTTTGCCAAATTTATTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               305-455, + strand, RNAz p=0.864096

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-455, + strand, RNAz p=0.864096

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-523, gnl|bosTau2|chr20 (23378488-23379008)
               

               
               2-523, gnl|Hg17|chr5 (37736145-37736817)
               

               
               2-523, gnl|Mm7|chr15 (7749566-7749059)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-523, gnl|bosTau2|chr20 (23378488-23379008)
               

               
               2-523, gnl|Hg17|chr5 (37736145-37736817)
               

               
               2-523, gnl|Mm7|chr15 (7749566-7749059)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	2-523, gnl\|bosTau2\|chr20 (23378488-23379008)
	2-523, gnl\|Hg17\|chr5 (37736145-37736817)
	2-523, gnl\|Mm7\|chr15 (7749566-7749059)