rtes33_g10.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTCCAGTCTCTGGTGCCTAAAACAAGTATATTTCTCTCTTAACACTGGCAATAACCAG TCTCCATACCACTGTTGCCTTTTTAAACCTCTTAATAATCTCATACTGTGTGTGTTGTCG GTTCCAATCCGATTATCACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTCCAGTCTCTGGTGCCTAAAACAAGTATATTTCTCTCTTAACACTGGCAATAACCAG TCTCCATACCACTGTTGCCTTTTTAAACCTCTTAATAATCTCATACTGTGTGTGTTGTCG GTTCCAATCCGATTATCACC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 41-140, - strand, RNAz p=0.630824 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-140, - strand, RNAz p=0.630824 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-140, gnl|bosTau2|chr5 (19035116-19034975) | |
| 1-140, gnl|canFam2|chr27 (4803693-4803185) | |
| 1-140, gnl|canFam2|chr27 (4803472-4803083) | |
| 1-140, gnl|canFam2|chr27 (4803913-4803076) | |
| 1-140, gnl|echTel1|scaffold_321311 (6840-7319) | |
| 1-140, gnl|echTel1|scaffold_321311 (7048-7423) | |
| 1-140, gnl|echTel1|scaffold_321311 (6622-7420) | |
| 1-140, gnl|hg17|chr11 (83158587-83158956) | |
| 1-140, gnl|hg17|chr12 (52095800-52096303) | |
| 1-140, gnl|Hg17|chr12 (52096087-52096226) | |
| 1-140, gnl|hg17|chrX (143881786-143882650) | |
| 1-140, gnl|loxAfr1|scaffold_136780 (2227-3048) | |
| 1-140, gnl|loxAfr1|scaffold_88914 (3961-4464) | |
| 1-140, gnl|loxAfr1|scaffold_88914 (4167-4566) | |
| 1-140, gnl|mm7|chr15 (102421888-102422349) | |
| 1-140, gnl|mm7|chr15 (102422086-102422451) | |
| 1-140, gnl|mm7|chr15 (102421682-102422449) | |
| 1-140, gnl|Mm7|chr15 (102422151-102422279) | |
| 1-140, gnl|oryCun1|scaffold_214650 (42219-42707) | |
| 1-140, gnl|oryCun1|scaffold_214650 (42442-42822) | |
| 1-140, gnl|oryCun1|scaffold_214650 (41993-42820) | |
| 1-140, gnl|panTro1|chr10 (53337716-53338219) | |
| 1-140, gnl|panTro1|chr9 (84613365-84613734) | |
| 1-140, gnl|panTro1|chrX (148976469-148977330) | |
| 1-140, gnl|rheMac2|chr11 (50483252-50483752) | |
| 1-140, gnl|rheMac2|chr11 (50483011-50483862) | |
| 1-140, gnl|rheMac2|chr14 (82040440-82040830) | |
| 1-140, gnl|rn3|chr7 (141270300-141270754) | |
| 1-140, gnl|rn3|chr7 (141270497-141270853) | |
| 1-140, gnl|rn3|chr7 (141270071-141270851) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-140, gnl|bosTau2|chr5 (19035116-19034975) | |
| 1-140, gnl|canFam2|chr27 (4803693-4803185) | |
| 1-140, gnl|canFam2|chr27 (4803472-4803083) | |
| 1-140, gnl|canFam2|chr27 (4803913-4803076) | |
| 1-140, gnl|echTel1|scaffold_321311 (6840-7319) | |
| 1-140, gnl|echTel1|scaffold_321311 (7048-7423) | |
| 1-140, gnl|echTel1|scaffold_321311 (6622-7420) | |
| 1-140, gnl|hg17|chr11 (83158587-83158956) | |
| 1-140, gnl|hg17|chr12 (52095800-52096303) | |
| 1-140, gnl|Hg17|chr12 (52096087-52096226) | |
| 1-140, gnl|hg17|chrX (143881786-143882650) | |
| 1-140, gnl|loxAfr1|scaffold_136780 (2227-3048) | |
| 1-140, gnl|loxAfr1|scaffold_88914 (3961-4464) | |
| 1-140, gnl|loxAfr1|scaffold_88914 (4167-4566) | |
| 1-140, gnl|mm7|chr15 (102421888-102422349) | |
| 1-140, gnl|mm7|chr15 (102422086-102422451) | |
| 1-140, gnl|mm7|chr15 (102421682-102422449) | |
| 1-140, gnl|Mm7|chr15 (102422151-102422279) | |
| 1-140, gnl|oryCun1|scaffold_214650 (42219-42707) | |
| 1-140, gnl|oryCun1|scaffold_214650 (42442-42822) | |
| 1-140, gnl|oryCun1|scaffold_214650 (41993-42820) | |
| 1-140, gnl|panTro1|chr10 (53337716-53338219) | |
| 1-140, gnl|panTro1|chr9 (84613365-84613734) | |
| 1-140, gnl|panTro1|chrX (148976469-148977330) | |
| 1-140, gnl|rheMac2|chr11 (50483252-50483752) | |
| 1-140, gnl|rheMac2|chr11 (50483011-50483862) | |
| 1-140, gnl|rheMac2|chr14 (82040440-82040830) | |
| 1-140, gnl|rn3|chr7 (141270300-141270754) | |
| 1-140, gnl|rn3|chr7 (141270497-141270853) | |
| 1-140, gnl|rn3|chr7 (141270071-141270851) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) |