Non-Coding RNA Search

rtes36_p11r1.y1

Sequence:


               
               TTGGTACATTAAGGAAAACTCTTCATCCTTCATGGAAAAAAAAAAGTGCTAACAGTAGAG
AAAATATCACCGGCATCTGAAGCTTTCCACTGACTGCCTAGCAATCAGCTAAAGAGGAGG
CAGAGTGAACCCCTGCAAAGTGGTCTGTGAACAGCCAGGGAGATGCAATAAACATGGCAA
AATGCTCACTTCAAGAGGGTAAAATCAAATGTAAATTTTCTTTGAATTACCTGGCAAAGG
CTAATTTCTGCCAACAAAAAGGGCTGAATGTTTGGGAAACAAGAAATCAGAATATAAAGT
ACCTTGATTTGATTTTTGTGCTTCACATTACTTCAAATGAAAGAAGAATAGAGGCAGAAG
GAAGGAAGGGAGATAAAAAGCAAAAGGGCAAACTGTAGCCTTCTTCCATGTAAATGAGTT
ATTCTTCTTAATGAGTACTGTTCCTGCAAGTAATTAGCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGTACATTAAGGAAAACTCTTCATCCTTCATGGAAAAAAAAAAGTGCTAACAGTAGAG
AAAATATCACCGGCATCTGAAGCTTTCCACTGACTGCCTAGCAATCAGCTAAAGAGGAGG
CAGAGTGAACCCCTGCAAAGTGGTCTGTGAACAGCCAGGGAGATGCAATAAACATGGCAA
AATGCTCACTTCAAGAGGGTAAAATCAAATGTAAATTTTCTTTGAATTACCTGGCAAAGG
CTAATTTCTGCCAACAAAAAGGGCTGAATGTTTGGGAAACAAGAAATCAGAATATAAAGT
ACCTTGATTTGATTTTTGTGCTTCACATTACTTCAAATGAAAGAAGAATAGAGGCAGAAG
GAAGGAAGGGAGATAAAAAGCAAAAGGGCAAACTGTAGCCTTCTTCCATGTAAATGAGTT
ATTCTTCTTAATGAGTACTGTTCCTGCAAGTAATTAGCTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               259-364, + strand, RNAz p=0.703825

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-364, + strand, RNAz p=0.703825

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               47-457, gnl|bosTau2|chr22 (44046243-44045850)
               

               
               47-457, gnl|canFam2|chr10 (5946720-5947760)
               

               
               47-457, gnl|dasNov1|scaffold_1068 (109092-110144)
               

               
               47-457, gnl|echTel1|scaffold_286061 (86337-85303)
               

               
               47-457, gnl|hg17|chr12 (57795640-57796684)
               

               
               47-457, gnl|Hg17|chr12 (57796265-57795852)
               

               
               47-457, gnl|loxAfr1|scaffold_7113 (70785-71816)
               

               
               47-457, gnl|mm7|chr10 (125255276-125254273)
               

               
               47-457, gnl|Mm7|chr10 (125254675-125255069)
               

               
               47-457, gnl|oryCun1|scaffold_210187 (85026-83983)
               

               
               47-457, gnl|panTro1|chr10 (59050072-59051116)
               

               
               47-457, gnl|rheMac2|chr11 (56258589-56259631)
               

               
               47-457, gnl|rn3|chr7 (65829429-65828410)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-457, gnl|bosTau2|chr22 (44046243-44045850)
               

               
               47-457, gnl|canFam2|chr10 (5946720-5947760)
               

               
               47-457, gnl|dasNov1|scaffold_1068 (109092-110144)
               

               
               47-457, gnl|echTel1|scaffold_286061 (86337-85303)
               

               
               47-457, gnl|hg17|chr12 (57795640-57796684)
               

               
               47-457, gnl|Hg17|chr12 (57796265-57795852)
               

               
               47-457, gnl|loxAfr1|scaffold_7113 (70785-71816)
               

               
               47-457, gnl|mm7|chr10 (125255276-125254273)
               

               
               47-457, gnl|Mm7|chr10 (125254675-125255069)
               

               
               47-457, gnl|oryCun1|scaffold_210187 (85026-83983)
               

               
               47-457, gnl|panTro1|chr10 (59050072-59051116)
               

               
               47-457, gnl|rheMac2|chr11 (56258589-56259631)
               

               
               47-457, gnl|rn3|chr7 (65829429-65828410)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	47-457, gnl\|bosTau2\|chr22 (44046243-44045850)
	47-457, gnl\|canFam2\|chr10 (5946720-5947760)
	47-457, gnl\|dasNov1\|scaffold_1068 (109092-110144)
	47-457, gnl\|echTel1\|scaffold_286061 (86337-85303)
	47-457, gnl\|hg17\|chr12 (57795640-57796684)
	47-457, gnl\|Hg17\|chr12 (57796265-57795852)
	47-457, gnl\|loxAfr1\|scaffold_7113 (70785-71816)
	47-457, gnl\|mm7\|chr10 (125255276-125254273)
	47-457, gnl\|Mm7\|chr10 (125254675-125255069)
	47-457, gnl\|oryCun1\|scaffold_210187 (85026-83983)
	47-457, gnl\|panTro1\|chr10 (59050072-59051116)
	47-457, gnl\|rheMac2\|chr11 (56258589-56259631)
	47-457, gnl\|rn3\|chr7 (65829429-65828410)