Non-Coding RNA Search

rtes37_a19r1.y1

Sequence:


               
               GGCAAATCTGCATCAGAGCATCTTAGTAGGAAAGTAAGTTCCTGGCACCAAAACCTTTTA
CTAAATTTGTTGTTCTACTCTCTTTTAGTCAATTTACTAAGTGATAAATTACTGGGCAGG
ACATGGGTTCACTTTGCCACAAGGAAACAAGGTCACCAGGGCGGCTTTGGGACAGCATTA
CTTCAAGGCTGAGTTAGAGATGAGACACCTTTATATTTGTGTAAAAGAAAAAAAAAACGA
ACACAGCAGCGCTTTTGAAAGAAATAAGCTGTTGTTCTCAAAGGAAAGAGCGTTTTCTTT
GCATAATTAAACTCTCCAGGTACTTAGACTACTGTGAAATGTTCTAACTTGTTGTAACCT
GTGTCTTGGAATCCCGCTATAGCTTTATTAGAATTCCCACAGAACGGCATAGGATGTGTG
TGGTGGTGCTTATCCAGGTGTGATTTTTGTGTTAACTTCAATCACAAGGTTGATCAGCTA
AGTGTTGGACCAAAGTGTACTTCCCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAATCTGCATCAGAGCATCTTAGTAGGAAAGTAAGTTCCTGGCACCAAAACCTTTTA
CTAAATTTGTTGTTCTACTCTCTTTTAGTCAATTTACTAAGTGATAAATTACTGGGCAGG
ACATGGGTTCACTTTGCCACAAGGAAACAAGGTCACCAGGGCGGCTTTGGGACAGCATTA
CTTCAAGGCTGAGTTAGAGATGAGACACCTTTATATTTGTGTAAAAGAAAAAAAAAACGA
ACACAGCAGCGCTTTTGAAAGAAATAAGCTGTTGTTCTCAAAGGAAAGAGCGTTTTCTTT
GCATAATTAAACTCTCCAGGTACTTAGACTACTGTGAAATGTTCTAACTTGTTGTAACCT
GTGTCTTGGAATCCCGCTATAGCTTTATTAGAATTCCCACAGAACGGCATAGGATGTGTG
TGGTGGTGCTTATCCAGGTGTGATTTTTGTGTTAACTTCAATCACAAGGTTGATCAGCTA
AGTGTTGGACCAAAGTGTACTTCCCTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               198-316, + strand, RNAz p=0.545767

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-316, + strand, RNAz p=0.545767

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_152510, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_152510, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-499, gnl|bosTau2|chr17 (42393238-42393719)
               

               
               3-499, gnl|Hg17|chr22 (28896760-28897244)
               

               
               3-499, gnl|Mm7|chr11 (4298531-4298070)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-499, gnl|bosTau2|chr17 (42393238-42393719)
               

               
               3-499, gnl|Hg17|chr22 (28896760-28897244)
               

               
               3-499, gnl|Mm7|chr11 (4298531-4298070)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	3-499, gnl\|bosTau2\|chr17 (42393238-42393719)
	3-499, gnl\|Hg17\|chr22 (28896760-28897244)
	3-499, gnl\|Mm7\|chr11 (4298531-4298070)