Non-Coding RNA Search

rtes37_h18r1.y1

Sequence:


               
               TTAACACTAATTTTGTGAATTTAAAACATTTGGCTCCCCTCAGTCTTCAAAACATTATCA
GACAGTTCTTTTAATGAGTTCTAATGCTACGTTAAATAAATACAATGAGCATTATAAACA
AAAGAAATTAGGGGAACCCAACTGCAATAAGCTGAAAAACTTACTGTGTAATGGCAGCAA
TGTTCAGCTCAGTAAAATCTGTCATTCTCATTCTGAAGAGTTCATCAAAAAGGAACCTCT
GTCAGATACCACAAGTCAGTGCATGACAGATGTACAAATTATTTTGGATTCAAATATAAC
CAAAGACACTAATGTAGATAAAGTACAACTGCAAAACTATAAGTGGTACCAAAAGAATGC
ACTTTTAGATAAAGTTAATGATGCTGAGATTAAAAAGGCTTTATTGCACTGTGCTCAAAA
CAAAATTGGGCCTGGCCAGTCAAATGTGCCTATTAGTTCCTCAGCTGCTGAAAAAGAGGA
GGAAGTGAATGCTCGTTTACTTCATTGTGTAAGCAAACAGAAAATTTTACTTAGCCAGGC
TAAAAGAACTCAGAAACATTTGCAGATGCTCCTGGCAAAGCATGTTGTTAAGCACTATGG
TCAGCAAATGAAATTTTCTATGAAACATCAACTCCCCAGAACGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAACACTAATTTTGTGAATTTAAAACATTTGGCTCCCCTCAGTCTTCAAAACATTATCA
GACAGTTCTTTTAATGAGTTCTAATGCTACGTTAAATAAATACAATGAGCATTATAAACA
AAAGAAATTAGGGGAACCCAACTGCAATAAGCTGAAAAACTTACTGTGTAATGGCAGCAA
TGTTCAGCTCAGTAAAATCTGTCATTCTCATTCTGAAGAGTTCATCAAAAAGGAACCTCT
GTCAGATACCACAAGTCAGTGCATGACAGATGTACAAATTATTTTGGATTCAAATATAAC
CAAAGACACTAATGTAGATAAAGTACAACTGCAAAACTATAAGTGGTACCAAAAGAATGC
ACTTTTAGATAAAGTTAATGATGCTGAGATTAAAAAGGCTTTATTGCACTGTGCTCAAAA
CAAAATTGGGCCTGGCCAGTCAAATGTGCCTATTAGTTCCTCAGCTGCTGAAAAAGAGGA
GGAAGTGAATGCTCGTTTACTTCATTGTGTAAGCAAACAGAAAATTTTACTTAGCCAGGC
TAAAAGAACTCAGAAACATTTGCAGATGCTCCTGGCAAAGCATGTTGTTAAGCACTATGG
TCAGCAAATGAAATTTTCTATGAAACATCAACTCCCCAGAACGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26349145|dbj|BAC38212.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26349145|dbj|BAC38212.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               79-355, - strand, RNAz p=0.810961
               

               
               476-595, + strand, RNAz p=0.96994

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-355, - strand, RNAz p=0.810961
               

               
               476-595, + strand, RNAz p=0.96994

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-638, gnl|bosTau2|chr2 (55467265-55467903)
               

               
               1-638, gnl|Hg17|chr2 (210844640-210844002)
               

               
               1-638, gnl|Mm7|chr1 (67041672-67041034)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-638, gnl|bosTau2|chr2 (55467265-55467903)
               

               
               1-638, gnl|Hg17|chr2 (210844640-210844002)
               

               
               1-638, gnl|Mm7|chr1 (67041672-67041034)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	79-355, - strand, RNAz p=0.810961
	476-595, + strand, RNAz p=0.96994

	1-638, gnl\|bosTau2\|chr2 (55467265-55467903)
	1-638, gnl\|Hg17\|chr2 (210844640-210844002)
	1-638, gnl\|Mm7\|chr1 (67041672-67041034)