Non-Coding RNA Search

rtes37_h22r1.y1

Sequence:


               
               CAGACTGCATCCTACCCCAGTCACCCCCCGATGGCCAGAGGTGCCCACAGCCAACACGTG
CTACACAAGCCCATCTGTGCATTCCACGAGGTATGGAAACTCTAGTGACATGTACACACC
CCTGACCACGCGCAGGAATTCTGAGTATGAGCACATGCAACACTTTCCTGGCTTTGCTTA
CATCAACGGAGAGGCCTCCACAGGATGGGCTAAATGACTGCTTTCATAGGAATCCATATT
TAATATTAATAATAATTATTAATAATAATAATAAGCCCCATACCCACCCCCCAGAAGACT
TTATCTCTATACATCATAACTCCCAGACTATTCCTAGGCATCCATTTTCCTAATGACCAT
GAGGCTGGGGTTCAGTGTGGGATGCGTAAACTTTAGTTCAGAAATGGGACTCACTAAAAG
TCAGTTCAGACTGGGTTCCCGTAGCCAAGCCAGACTTGACTGTTTGGATAAAGCACTATC
TTGGGCAGGCTGACCTGTGCCTCTTCCCTCTATTCCATGACTTTGCGTTATGTTGGCAAC
TACTCCCAGTAAACTACTTATTTTCCTGTTGACAAAAGCTCTGTAGTCTTAAAGGATGGC
TACTGGAGACAGAATCTGGTTTGTGTTCTTGGATGGGCACATAATTTACCAAGAGCATCC
GCCTTTCCACCTGTCTGTCATCTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGACTGCATCCTACCCCAGTCACCCCCCGATGGCCAGAGGTGCCCACAGCCAACACGTG
CTACACAAGCCCATCTGTGCATTCCACGAGGTATGGAAACTCTAGTGACATGTACACACC
CCTGACCACGCGCAGGAATTCTGAGTATGAGCACATGCAACACTTTCCTGGCTTTGCTTA
CATCAACGGAGAGGCCTCCACAGGATGGGCTAAATGACTGCTTTCATAGGAATCCATATT
TAATATTAATAATAATTATTAATAATAATAATAAGCCCCATACCCACCCCCCAGAAGACT
TTATCTCTATACATCATAACTCCCAGACTATTCCTAGGCATCCATTTTCCTAATGACCAT
GAGGCTGGGGTTCAGTGTGGGATGCGTAAACTTTAGTTCAGAAATGGGACTCACTAAAAG
TCAGTTCAGACTGGGTTCCCGTAGCCAAGCCAGACTTGACTGTTTGGATAAAGCACTATC
TTGGGCAGGCTGACCTGTGCCTCTTCCCTCTATTCCATGACTTTGCGTTATGTTGGCAAC
TACTCCCAGTAAACTACTTATTTTCCTGTTGACAAAAGCTCTGTAGTCTTAAAGGATGGC
TACTGGAGACAGAATCTGGTTTGTGTTCTTGGATGGGCACATAATTTACCAAGAGCATCC
GCCTTTCCACCTGTCTGTCATCTGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47219785|emb|CAG03412.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47219785|emb|CAG03412.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               200-316, - strand, RNAz p=0.721827
               

               
               574-687, + strand, RNAz p=0.51941

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-316, - strand, RNAz p=0.721827
               

               
               574-687, + strand, RNAz p=0.51941

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032491, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032491, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-687, gnl|bosTau2|chr5 (41054692-41054019)
               

               
               1-687, gnl|Hg17|chr12 (105657498-105658183)
               

               
               1-687, gnl|Mm7|chr10 (84446375-84447049)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-687, gnl|bosTau2|chr5 (41054692-41054019)
               

               
               1-687, gnl|Hg17|chr12 (105657498-105658183)
               

               
               1-687, gnl|Mm7|chr10 (84446375-84447049)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	200-316, - strand, RNAz p=0.721827
	574-687, + strand, RNAz p=0.51941

	1-687, gnl\|bosTau2\|chr5 (41054692-41054019)
	1-687, gnl\|Hg17\|chr12 (105657498-105658183)
	1-687, gnl\|Mm7\|chr10 (84446375-84447049)