Non-Coding RNA Search

rtes37_m15r1.y1

Sequence:


               
               CCCGGACCATCCAGGAGAAAGAAGTCACCATTGTGAACAGCACAGAGTGTGACAGCTTCT
ACCACAGGTTCTTCAAAATCCCCTCTCTGATTCAGATCATCAACTCCCAGATGATTTGTG
CAAAGGACGTCAACAGGGAACAATTCTGCTATGAGATAAGTGGTGAGCCCTTGGCCTGTC
CTGTGGCGAGCATATGGTACCTGGTGGGCATGGTGAGCTGGGGACCAGGCTGCAAGAAGA
GTGAGGCCCCACCCATCTACCTACACATCTCCTCCTACGAGCGGTGGATCTGGGAACACA
TCAATGGGCAGACTTTGCCAACCCCATCCAGGGCTCTGCTCCTGGTACTCCCGCTGCACC
TCAGCCTCCTTGCTACCCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGACCATCCAGGAGAAAGAAGTCACCATTGTGAACAGCACAGAGTGTGACAGCTTCT
ACCACAGGTTCTTCAAAATCCCCTCTCTGATTCAGATCATCAACTCCCAGATGATTTGTG
CAAAGGACGTCAACAGGGAACAATTCTGCTATGAGATAAGTGGTGAGCCCTTGGCCTGTC
CTGTGGCGAGCATATGGTACCTGGTGGGCATGGTGAGCTGGGGACCAGGCTGCAAGAAGA
GTGAGGCCCCACCCATCTACCTACACATCTCCTCCTACGAGCGGTGGATCTGGGAACACA
TCAATGGGCAGACTTTGCCAACCCCATCCAGGGCTCTGCTCCTGGTACTCCCGCTGCACC
TCAGCCTCCTTGCTACCCTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-121, - strand, RNAz p=0.699515

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, - strand, RNAz p=0.699515

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               3-156, gnl|bosTau2|chr22 (41222799-41222646)
               

               
               3-156, gnl|canFam2|chr20 (45049893-45049670)
               

               
               3-156, gnl|dasNov1|scaffold_30479 (7336-7075)
               

               
               3-156, gnl|echTel1|scaffold_231462 (9337-9574)
               

               
               3-156, gnl|hg17|chr3 (46729303-46729536)
               

               
               3-156, gnl|Hg17|chr3 (46729544-46729391)
               

               
               3-156, gnl|loxAfr1|scaffold_24408 (26487-26749)
               

               
               3-156, gnl|mm7|chr9 (110561679-110561459)
               

               
               3-156, gnl|Mm7|chr9 (110561449-110561602)
               

               
               3-156, gnl|panTro1|chr2 (48169193-48169426)
               

               
               3-156, gnl|rn3|chr8 (115272176-115271956)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-156, gnl|bosTau2|chr22 (41222799-41222646)
               

               
               3-156, gnl|canFam2|chr20 (45049893-45049670)
               

               
               3-156, gnl|dasNov1|scaffold_30479 (7336-7075)
               

               
               3-156, gnl|echTel1|scaffold_231462 (9337-9574)
               

               
               3-156, gnl|hg17|chr3 (46729303-46729536)
               

               
               3-156, gnl|Hg17|chr3 (46729544-46729391)
               

               
               3-156, gnl|loxAfr1|scaffold_24408 (26487-26749)
               

               
               3-156, gnl|mm7|chr9 (110561679-110561459)
               

               
               3-156, gnl|Mm7|chr9 (110561449-110561602)
               

               
               3-156, gnl|panTro1|chr2 (48169193-48169426)
               

               
               3-156, gnl|rn3|chr8 (115272176-115271956)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	3-156, gnl\|bosTau2\|chr22 (41222799-41222646)
	3-156, gnl\|canFam2\|chr20 (45049893-45049670)
	3-156, gnl\|dasNov1\|scaffold_30479 (7336-7075)
	3-156, gnl\|echTel1\|scaffold_231462 (9337-9574)
	3-156, gnl\|hg17\|chr3 (46729303-46729536)
	3-156, gnl\|Hg17\|chr3 (46729544-46729391)
	3-156, gnl\|loxAfr1\|scaffold_24408 (26487-26749)
	3-156, gnl\|mm7\|chr9 (110561679-110561459)
	3-156, gnl\|Mm7\|chr9 (110561449-110561602)
	3-156, gnl\|panTro1\|chr2 (48169193-48169426)
	3-156, gnl\|rn3\|chr8 (115272176-115271956)