Non-Coding RNA Search

rtes37_o23r1.y1

Sequence:


               
               GTTGGATGCGACCCCTTCCATGACCCCCTGCGGGACGACTCCAGGTTTCAAAGGAAAAAA
TTAAACATGAAAACTAGAAGTGAGTTAAAAACCTGTGATGGTATAAAACCAATCTGCAAA
AAAGATGTCTGAAAAGGAGAGTACTCCAGAAGAGATAGAGGATGTCACTAGTCAACTTAG
GGAAGAATCTACATCATGGTCAGTGGAGGAATCTGGATTTATTAAAGAATCATCAAGTTC
ATTAAAGGAAGCCTCTGATGGGACACCTTCCAACCAAATTAGTGAAATGCGTCCTAGAAA
AAATATGTTAGGTATACATGATGATACATCAACATCCTCCTCTGGAAGTAAGGCTAAGAG
ATTTTCTGAAATAATCACTAGACCTGACAGCTTGCAGTCAAAAACTGAGATTTCACCAAG
TTCGTCATTATCAATAACTGGGATGACTGCTGAATATCAAGCTTTCCTTGAAACATTAGA
AAAAATTAGTCCACAACTCTCTGAAGAAAGTCAGAAAGGATTTGCTTTAGGACTAGATAA
CTTTACAGTTAACCTTAAAGCCAAGGGTTTACAAGAATTCCCTAAGGACATTTTAAAAAC
CAATTATGTAAAATATCTAAATTTAGATGAGAACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGGATGCGACCCCTTCCATGACCCCCTGCGGGACGACTCCAGGTTTCAAAGGAAAAAA
TTAAACATGAAAACTAGAAGTGAGTTAAAAACCTGTGATGGTATAAAACCAATCTGCAAA
AAAGATGTCTGAAAAGGAGAGTACTCCAGAAGAGATAGAGGATGTCACTAGTCAACTTAG
GGAAGAATCTACATCATGGTCAGTGGAGGAATCTGGATTTATTAAAGAATCATCAAGTTC
ATTAAAGGAAGCCTCTGATGGGACACCTTCCAACCAAATTAGTGAAATGCGTCCTAGAAA
AAATATGTTAGGTATACATGATGATACATCAACATCCTCCTCTGGAAGTAAGGCTAAGAG
ATTTTCTGAAATAATCACTAGACCTGACAGCTTGCAGTCAAAAACTGAGATTTCACCAAG
TTCGTCATTATCAATAACTGGGATGACTGCTGAATATCAAGCTTTCCTTGAAACATTAGA
AAAAATTAGTCCACAACTCTCTGAAGAAAGTCAGAAAGGATTTGCTTTAGGACTAGATAA
CTTTACAGTTAACCTTAAAGCCAAGGGTTTACAAGAATTCCCTAAGGACATTTTAAAAAC
CAATTATGTAAAATATCTAAATTTAGATGAGAACAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               465-633, - strand, RNAz p=0.993953

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               465-633, - strand, RNAz p=0.993953

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               47-633, gnl|bosTau2|chr4 (960712-960104)
               

               
               47-633, gnl|Hg17|chr7 (91439240-91438647)
               

               
               47-633, gnl|Mm7|chr5 (3855639-3856205)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-633, gnl|bosTau2|chr4 (960712-960104)
               

               
               47-633, gnl|Hg17|chr7 (91439240-91438647)
               

               
               47-633, gnl|Mm7|chr5 (3855639-3856205)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	47-633, gnl\|bosTau2\|chr4 (960712-960104)
	47-633, gnl\|Hg17\|chr7 (91439240-91438647)
	47-633, gnl\|Mm7\|chr5 (3855639-3856205)