Non-Coding RNA Search

rtes40_f19.y1

Sequence:


               
               CCATTCAGGCACTGTCAACCACAACATTGGTGCAACAAATGAATAATACCTAAGTTCCAG
GCAAAACTGAAAAGTAACAGTTTCTTTGACACCTTCCTCCTCTTCCCTGACCCCAAGAAC
CTCTTTCCTGGAAGCTGCCTTATCAGAATCTCCCACTTATTCAAGAATGCTATTCTCTCA
AAGGTCTAAGGTTTCCTCATACAAAATTTCCATTTTCTGAAGCAGAAATAAAGTCTGACT
TACCATTAAAGCATCTGATCATAAGGATCCAACATTGCTGCAAATTGCAGCACAGGTCAC
AGATGTGACACAAATCTGGCATTGCTGTGACAGAAGCCAGCAGCCGCAGCTCTGATTCAA
CCCCTGGCCCAGGAACTGCCATATGCCACAGGTAAGACCCTAAAAAAAAAAAAAAAAAAA
GGAAGGAAGGGAAGGAGGAAGAAAGATTCTTTTCAAGAAAAATCAAGAATTAAAAAAAGG
AAAAAAAGAAAAATCAGGAATTTTTCAAATCGCCGTACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATTCAGGCACTGTCAACCACAACATTGGTGCAACAAATGAATAATACCTAAGTTCCAG
GCAAAACTGAAAAGTAACAGTTTCTTTGACACCTTCCTCCTCTTCCCTGACCCCAAGAAC
CTCTTTCCTGGAAGCTGCCTTATCAGAATCTCCCACTTATTCAAGAATGCTATTCTCTCA
AAGGTCTAAGGTTTCCTCATACAAAATTTCCATTTTCTGAAGCAGAAATAAAGTCTGACT
TACCATTAAAGCATCTGATCATAAGGATCCAACATTGCTGCAAATTGCAGCACAGGTCAC
AGATGTGACACAAATCTGGCATTGCTGTGACAGAAGCCAGCAGCCGCAGCTCTGATTCAA
CCCCTGGCCCAGGAACTGCCATATGCCACAGGTAAGACCCTAAAAAAAAAAAAAAAAAAA
GGAAGGAAGGGAAGGAGGAAGAAAGATTCTTTTCAAGAAAAATCAAGAATTAAAAAAAGG
AAAAAAAGAAAAATCAGGAATTTTTCAAATCGCCGTACTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               38-156, - strand, RNAz p=0.95714

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-156, - strand, RNAz p=0.95714

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               2-264, gnl|bosTau2|chr10 (25278249-25278517)
               

               
               2-264, gnl|canFam2|chr30 (11694495-11694683)
               

               
               2-264, gnl|dasNov1|scaffold_11450 (13802-14017)
               

               
               2-264, gnl|echTel1|scaffold_319886 (9008-8809)
               

               
               2-264, gnl|hg17|chr15 (39738362-39738568)
               

               
               2-264, gnl|Hg17|chr15 (39738628-39738388)
               

               
               2-264, gnl|loxAfr1|scaffold_3669 (108516-108304)
               

               
               2-264, gnl|mm7|chr2 (119636479-119636638)
               

               
               2-264, gnl|panTro1|chr16 (39710974-39711180)
               

               
               2-264, gnl|rheMac2|chr7 (20084044-20084249)
               

               
               2-264, gnl|rn3|chr3 (106301361-106301520)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-264, gnl|bosTau2|chr10 (25278249-25278517)
               

               
               2-264, gnl|canFam2|chr30 (11694495-11694683)
               

               
               2-264, gnl|dasNov1|scaffold_11450 (13802-14017)
               

               
               2-264, gnl|echTel1|scaffold_319886 (9008-8809)
               

               
               2-264, gnl|hg17|chr15 (39738362-39738568)
               

               
               2-264, gnl|Hg17|chr15 (39738628-39738388)
               

               
               2-264, gnl|loxAfr1|scaffold_3669 (108516-108304)
               

               
               2-264, gnl|mm7|chr2 (119636479-119636638)
               

               
               2-264, gnl|panTro1|chr16 (39710974-39711180)
               

               
               2-264, gnl|rheMac2|chr7 (20084044-20084249)
               

               
               2-264, gnl|rn3|chr3 (106301361-106301520)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	2-264, gnl\|bosTau2\|chr10 (25278249-25278517)
	2-264, gnl\|canFam2\|chr30 (11694495-11694683)
	2-264, gnl\|dasNov1\|scaffold_11450 (13802-14017)
	2-264, gnl\|echTel1\|scaffold_319886 (9008-8809)
	2-264, gnl\|hg17\|chr15 (39738362-39738568)
	2-264, gnl\|Hg17\|chr15 (39738628-39738388)
	2-264, gnl\|loxAfr1\|scaffold_3669 (108516-108304)
	2-264, gnl\|mm7\|chr2 (119636479-119636638)
	2-264, gnl\|panTro1\|chr16 (39710974-39711180)
	2-264, gnl\|rheMac2\|chr7 (20084044-20084249)
	2-264, gnl\|rn3\|chr3 (106301361-106301520)