Non-Coding RNA Search

rtes40_o5.y1

Sequence:


               
               CAGCAGTCCTCAGCCCATCTATGGGGAAAACCCTTCCACCAGGAACTGAGCCCAATCCTC
TCTTCAAGACAGACAACAGTAAGGATGCTCCTTTCGGTGTTAATTTTGATGCTACTTCCT
TCAAACCTCAAACACCATCTAATTTTAAAGAAATATTTTTAGCCGATTCTACATTAACTC
TTCCAAAAACTTCTAGGCCTGCCTCTCCTGATAAAGTCATTAACACAAGAGGACCCATTG
CAAACACTCTAACTGAATTAGATGGCCTACACCATAGGTTAACCTTTCTTCCTTCTGATC
TCACAACATTCCCGGGAACTTCCGAATATTCGAAACTTGTTCCTGTTACTATTACAGGAG
AAGATACCATCAAAAAGGTTGATTATAACATTCCACCTGATGAAATAATTATTCCATTTA
AAAAAGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAGTCCTCAGCCCATCTATGGGGAAAACCCTTCCACCAGGAACTGAGCCCAATCCTC
TCTTCAAGACAGACAACAGTAAGGATGCTCCTTTCGGTGTTAATTTTGATGCTACTTCCT
TCAAACCTCAAACACCATCTAATTTTAAAGAAATATTTTTAGCCGATTCTACATTAACTC
TTCCAAAAACTTCTAGGCCTGCCTCTCCTGATAAAGTCATTAACACAAGAGGACCCATTG
CAAACACTCTAACTGAATTAGATGGCCTACACCATAGGTTAACCTTTCTTCCTTCTGATC
TCACAACATTCCCGGGAACTTCCGAATATTCGAAACTTGTTCCTGTTACTATTACAGGAG
AAGATACCATCAAAAAGGTTGATTATAACATTCCACCTGATGAAATAATTATTCCATTTA
AAAAAGTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               246-365, - strand, RNAz p=0.604236

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               246-365, - strand, RNAz p=0.604236

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-429, gnl|bosTau2|chr6 (45869545-45869121)
               

               
               5-429, gnl|Hg17|chr4 (71371632-71372131)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-429, gnl|bosTau2|chr6 (45869545-45869121)
               

               
               5-429, gnl|Hg17|chr4 (71371632-71372131)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	5-429, gnl\|bosTau2\|chr6 (45869545-45869121)
	5-429, gnl\|Hg17\|chr4 (71371632-71372131)