Non-Coding RNA Search

rthg02_d4.y1

Sequence:


               
               GTATGATGGTGAATTACTGTGGATTTTAAAACTTCCTAAAACGTGCCTGCAAGTATTTAT
ATAAACCTTCAGGTATGTGAGCCTTAATTCTTAGGATAATTTAATTTTTGTTGTGAGAGG
GAGGGGGGAAGGAGCAGGCAAATTTGAATGTAAATTCTGTGTACATGAAGTATGAATGGA
AGGTGGGGAAGAGAAAATCTTTTCTAGCATGTAATCTCTTCAGCAAAGATTTTCCCTTGA
CTATTTTAACTGCTTTATTACCACTCAAGTATTTTTATAAGTTCTGAATTAATTCCAAGT
GTTTTGTATATTTCTTCATACGCACCATCTTGCCCTGAAGTTCTCTGCTGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATGATGGTGAATTACTGTGGATTTTAAAACTTCCTAAAACGTGCCTGCAAGTATTTAT
ATAAACCTTCAGGTATGTGAGCCTTAATTCTTAGGATAATTTAATTTTTGTTGTGAGAGG
GAGGGGGGAAGGAGCAGGCAAATTTGAATGTAAATTCTGTGTACATGAAGTATGAATGGA
AGGTGGGGAAGAGAAAATCTTTTCTAGCATGTAATCTCTTCAGCAAAGATTTTCCCTTGA
CTATTTTAACTGCTTTATTACCACTCAAGTATTTTTATAAGTTCTGAATTAATTCCAAGT
GTTTTGTATATTTCTTCATACGCACCATCTTGCCCTGAAGTTCTCTGCTGTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-141, - strand, RNAz p=0.922587

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-141, - strand, RNAz p=0.922587

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-354, gnl|bosTau2|chr29 (35061590-35061937)
               

               
               2-354, gnl|canFam2|chr18 (56389377-56388763)
               

               
               2-354, gnl|dasNov1|scaffold_39602 (7637-8256)
               

               
               2-354, gnl|echTel1|scaffold_17179 (5800-6449)
               

               
               2-354, gnl|hg17|chr11 (63151269-63151881)
               

               
               2-354, gnl|Hg17|chr11 (63151755-63151423)
               

               
               2-354, gnl|loxAfr1|scaffold_1022 (124622-124027)
               

               
               2-354, gnl|mm7|chr19 (7356068-7355515)
               

               
               2-354, gnl|Mm7|chr19 (7355613-7355913)
               

               
               2-354, gnl|oryCun1|scaffold_195108 (2756-3349)
               

               
               2-354, gnl|panTro1|chr9 (64147568-64148183)
               

               
               2-354, gnl|rheMac2|chr14 (10828748-10828136)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-354, gnl|bosTau2|chr29 (35061590-35061937)
               

               
               2-354, gnl|canFam2|chr18 (56389377-56388763)
               

               
               2-354, gnl|dasNov1|scaffold_39602 (7637-8256)
               

               
               2-354, gnl|echTel1|scaffold_17179 (5800-6449)
               

               
               2-354, gnl|hg17|chr11 (63151269-63151881)
               

               
               2-354, gnl|Hg17|chr11 (63151755-63151423)
               

               
               2-354, gnl|loxAfr1|scaffold_1022 (124622-124027)
               

               
               2-354, gnl|mm7|chr19 (7356068-7355515)
               

               
               2-354, gnl|Mm7|chr19 (7355613-7355913)
               

               
               2-354, gnl|oryCun1|scaffold_195108 (2756-3349)
               

               
               2-354, gnl|panTro1|chr9 (64147568-64148183)
               

               
               2-354, gnl|rheMac2|chr14 (10828748-10828136)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	2-354, gnl\|bosTau2\|chr29 (35061590-35061937)
	2-354, gnl\|canFam2\|chr18 (56389377-56388763)
	2-354, gnl\|dasNov1\|scaffold_39602 (7637-8256)
	2-354, gnl\|echTel1\|scaffold_17179 (5800-6449)
	2-354, gnl\|hg17\|chr11 (63151269-63151881)
	2-354, gnl\|Hg17\|chr11 (63151755-63151423)
	2-354, gnl\|loxAfr1\|scaffold_1022 (124622-124027)
	2-354, gnl\|mm7\|chr19 (7356068-7355515)
	2-354, gnl\|Mm7\|chr19 (7355613-7355913)
	2-354, gnl\|oryCun1\|scaffold_195108 (2756-3349)
	2-354, gnl\|panTro1\|chr9 (64147568-64148183)
	2-354, gnl\|rheMac2\|chr14 (10828748-10828136)