Non-Coding RNA Search

rthg08_l12.y1

Sequence:


               
               CAAAAGATGTGTGATTGGTACCCAGGAGTGATTCTGCAGTACCTATGCTGTAGAAGTTCT
TCTGGCATCTGTCCAACCATGCCCACTCCCAGACAATTGGGAATTTATTTAGCTCTTCTC
ACTTTATTTTCAAGTTTGCTAAACTTCCAATTCTCTTTTAAGATCAAGTGGTTGAGTCAT
TGTTATTTTATTTGAGGGAACTAAATTCAACACTAAGACAGGATTTTATTTTTGAACAAT
TGTAAGTTGTTCAAAGGAGCAGGAGAAATTGCTGAACTTTGGAAAGTTTCAGGACCAAGT
TAACATTCTTCTTGCCTTCCAAATATGGCTTTATTTTATCTTCTAATTATAAACATGAAA
TAAATAGTTGAGATATATTTGTAAGCATTGAACATTCTTATGCTCTTAATTCAGCATCAT
TCATACAATCAAGTTCACTTATGGATCCATCTACCTATCCACCAATTTTTTATGCTTATT
TTTTCTGATTAGGTCTATATTAAATATGGAAATCACAAAATAGAGAATAATGTCTCAACT
CTAATGGATTGATGGATTTTTAAAAAAATCTAGTTGGTTTTTAAGAAATGTAGGAGAAGT
AGAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAGATGTGTGATTGGTACCCAGGAGTGATTCTGCAGTACCTATGCTGTAGAAGTTCT
TCTGGCATCTGTCCAACCATGCCCACTCCCAGACAATTGGGAATTTATTTAGCTCTTCTC
ACTTTATTTTCAAGTTTGCTAAACTTCCAATTCTCTTTTAAGATCAAGTGGTTGAGTCAT
TGTTATTTTATTTGAGGGAACTAAATTCAACACTAAGACAGGATTTTATTTTTGAACAAT
TGTAAGTTGTTCAAAGGAGCAGGAGAAATTGCTGAACTTTGGAAAGTTTCAGGACCAAGT
TAACATTCTTCTTGCCTTCCAAATATGGCTTTATTTTATCTTCTAATTATAAACATGAAA
TAAATAGTTGAGATATATTTGTAAGCATTGAACATTCTTATGCTCTTAATTCAGCATCAT
TCATACAATCAAGTTCACTTATGGATCCATCTACCTATCCACCAATTTTTTATGCTTATT
TTTTCTGATTAGGTCTATATTAAATATGGAAATCACAAAATAGAGAATAATGTCTCAACT
CTAATGGATTGATGGATTTTTAAAAAAATCTAGTTGGTTTTTAAGAAATGTAGGAGAAGT
AGAATAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-109, + strand, RNAz p=0.965999

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-109, + strand, RNAz p=0.965999

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-551, gnl|bosTau2|chr23 (29011272-29010722)
               

               
               1-551, gnl|Hg17|chr6 (22832541-22833100)
               

               
               1-551, gnl|Mm7|chr13 (25935173-25934607)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-551, gnl|bosTau2|chr23 (29011272-29010722)
               

               
               1-551, gnl|Hg17|chr6 (22832541-22833100)
               

               
               1-551, gnl|Mm7|chr13 (25935173-25934607)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	1-551, gnl\|bosTau2\|chr23 (29011272-29010722)
	1-551, gnl\|Hg17\|chr6 (22832541-22833100)
	1-551, gnl\|Mm7\|chr13 (25935173-25934607)