Non-Coding RNA Search

rthg11_d24.y1

Sequence:


               
               tgtaatatctaagaaaacatttccttaatccaaagtcatgaagatatatacctttgcttg
cttttaagagttttctatttttaggtcttaaaattagatctttgtctcatttgagttcat
tttatacatagtgtatatggtatgaagtagaggtccaacttcattcaatagcatgtgaat
atatacttttcttagcaccatttgtttaagagactattatctttccatttaattaccttc
actcctttgtcaaaaaccagttgaccGTAAGAGATTATTTTTGTACTCTCAGTTCTGTTC
TATTGATTTCTATATTATATTATTTCTGTACTCTCAGTTCTATTTTATTGATTTTTATAT
TTTGGTATATTCTATTGGTCCTTATGCCAGCTGCTCCctgacttgattactatagctttg
tagtaagttttgaaatttggaagtgagttctccaactttgttcttctttcccaagattgt
tttgcctatttggggctcctttaatttccatatgaactttaaaatcagcttatccgtttc
tgcaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               tgtaatatctaagaaaacatttccttaatccaaagtcatgaagatatatacctttgcttg
cttttaagagttttctatttttaggtcttaaaattagatctttgtctcatttgagttcat
tttatacatagtgtatatggtatgaagtagaggtccaacttcattcaatagcatgtgaat
atatacttttcttagcaccatttgtttaagagactattatctttccatttaattaccttc
actcctttgtcaaaaaccagttgaccGTAAGAGATTATTTTTGTACTCTCAGTTCTGTTC
TATTGATTTCTATATTATATTATTTCTGTACTCTCAGTTCTATTTTATTGATTTTTATAT
TTTGGTATATTCTATTGGTCCTTATGCCAGCTGCTCCctgacttgattactatagctttg
tagtaagttttgaaatttggaagtgagttctccaactttgttcttctttcccaagattgt
tttgcctatttggggctcctttaatttccatatgaactttaaaatcagcttatccgtttc
tgcaa

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-331, gnl|bosTau2|chr29 (4083214-4083543)
               

               
               1-331, gnl|Mm7|chr7 (85405205-85404902)
               


               
               7-315, gnl|bosTau2|chr25 (17450625-17450925)
               

               
               7-315, gnl|hg17|chr5 (54129688-54130943)
               

               
               7-315, gnl|Hg17|chr5 (54130215-54129903)
               

               
               7-315, gnl|panTro1|chr4 (62086456-62085242)
               

               
               7-315, gnl|rheMac2|chr6 (52459013-52460196)
               


               
               338-545, gnl|bosTau2|chr25 (17450889-17451091)
               

               
               338-545, gnl|hg17|chr5 (54129688-54130943)
               

               
               338-545, gnl|Hg17|chr5 (54129939-54129740)
               

               
               338-545, gnl|panTro1|chr4 (62086456-62085242)
               

               
               338-545, gnl|rheMac2|chr6 (52459013-52460196)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-331, gnl|bosTau2|chr29 (4083214-4083543)
               

               
               1-331, gnl|Mm7|chr7 (85405205-85404902)
               


               
               7-315, gnl|bosTau2|chr25 (17450625-17450925)
               

               
               7-315, gnl|hg17|chr5 (54129688-54130943)
               

               
               7-315, gnl|Hg17|chr5 (54130215-54129903)
               

               
               7-315, gnl|panTro1|chr4 (62086456-62085242)
               

               
               7-315, gnl|rheMac2|chr6 (52459013-52460196)
               


               
               338-545, gnl|bosTau2|chr25 (17450889-17451091)
               

               
               338-545, gnl|hg17|chr5 (54129688-54130943)
               

               
               338-545, gnl|Hg17|chr5 (54129939-54129740)
               

               
               338-545, gnl|panTro1|chr4 (62086456-62085242)
               

               
               338-545, gnl|rheMac2|chr6 (52459013-52460196)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               thg (0.126791)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	1-331, gnl\|bosTau2\|chr29 (4083214-4083543)
	1-331, gnl\|Mm7\|chr7 (85405205-85404902)

	7-315, gnl\|bosTau2\|chr25 (17450625-17450925)
	7-315, gnl\|hg17\|chr5 (54129688-54130943)
	7-315, gnl\|Hg17\|chr5 (54130215-54129903)
	7-315, gnl\|panTro1\|chr4 (62086456-62085242)
	7-315, gnl\|rheMac2\|chr6 (52459013-52460196)

	338-545, gnl\|bosTau2\|chr25 (17450889-17451091)
	338-545, gnl\|hg17\|chr5 (54129688-54130943)
	338-545, gnl\|Hg17\|chr5 (54129939-54129740)
	338-545, gnl\|panTro1\|chr4 (62086456-62085242)
	338-545, gnl\|rheMac2\|chr6 (52459013-52460196)