Non-Coding RNA Search

rthg11_i23.y1

Sequence:


               
               TCTTGAATGACATTCCAAGACTTAAATAGTGCAAGCTGAGATTCCTTGCCAAATTTCCCT
CTCGCTCTCACTGAAATAGCTTTGTGCACTGCAGCACAGTGACAGGGGAAGGTGAAACTG
TCGGAGTGGTTTGCTCAATTAGTCTCAATTTGCAGTGGGGAACGTACATCCCACGTTCAC
ACAGGATGCTGCACTCTGCAAAGACTAACTCAGACACCCAGTCTTCAGCAAAGGGGATTG
TGAAATGCCTTCTTCATTGAATGCTTGTTGAGTTTAGGATCCCTTTTCTAAGCAGCCTCA
ATCCAACCACAGCCTGGTAGAGAATTTAATAAGAAGGAATATGAGCCTTGCTCACCTACC
CCTCATTCCCAAGAGTATGTATGTAGCAATTACTTAATTATATTACTTTGGCAGTTTGTT
CAGCCATGCAAGTTTGACTGGACCCACATGTAGGAGGGTCGTGTCAAAAGAATGAGCCAG
ACTTTAAAAGAATTCAAACTTTGGAAGGAAAAGTCTTTAATACTAAAAAAAAAAAAAAAA
AA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTGAATGACATTCCAAGACTTAAATAGTGCAAGCTGAGATTCCTTGCCAAATTTCCCT
CTCGCTCTCACTGAAATAGCTTTGTGCACTGCAGCACAGTGACAGGGGAAGGTGAAACTG
TCGGAGTGGTTTGCTCAATTAGTCTCAATTTGCAGTGGGGAACGTACATCCCACGTTCAC
ACAGGATGCTGCACTCTGCAAAGACTAACTCAGACACCCAGTCTTCAGCAAAGGGGATTG
TGAAATGCCTTCTTCATTGAATGCTTGTTGAGTTTAGGATCCCTTTTCTAAGCAGCCTCA
ATCCAACCACAGCCTGGTAGAGAATTTAATAAGAAGGAATATGAGCCTTGCTCACCTACC
CCTCATTCCCAAGAGTATGTATGTAGCAATTACTTAATTATATTACTTTGGCAGTTTGTT
CAGCCATGCAAGTTTGACTGGACCCACATGTAGGAGGGTCGTGTCAAAAGAATGAGCCAG
ACTTTAAAAGAATTCAAACTTTGGAAGGAAAAGTCTTTAATACTAAAAAAAAAAAAAAAA
AA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               393-509, - strand, RNAz p=0.544107

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               393-509, - strand, RNAz p=0.544107

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-537, gnl|bosTau2|chr20 (1694709-1695242)
               

               
               1-537, gnl|canFam2|chr4 (45185134-45184398)
               

               
               1-537, gnl|dasNov1|scaffold_549 (98111-97272)
               

               
               1-537, gnl|echTel1|scaffold_310188 (41854-41087)
               

               
               1-537, gnl|hg17|chr5 (169221919-169222683)
               

               
               1-537, gnl|Hg17|chr5 (169222248-169222786)
               

               
               1-537, gnl|loxAfr1|scaffold_30517 (7376-6633)
               

               
               1-537, gnl|mm7|chr11 (34373738-34373013)
               

               
               1-537, gnl|Mm7|chr11 (34373409-34372929)
               

               
               1-537, gnl|monDom2|scaffold_6 (31727735-31727039)
               

               
               1-537, gnl|oryCun1|scaffold_214654 (256510-257267)
               

               
               1-537, gnl|panTro1|chr4 (176473406-176474170)
               

               
               1-537, gnl|rheMac2|chr6 (166249861-166250627)
               

               
               1-537, gnl|rn3|chr10 (19404082-19403353)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-537, gnl|bosTau2|chr20 (1694709-1695242)
               

               
               1-537, gnl|canFam2|chr4 (45185134-45184398)
               

               
               1-537, gnl|dasNov1|scaffold_549 (98111-97272)
               

               
               1-537, gnl|echTel1|scaffold_310188 (41854-41087)
               

               
               1-537, gnl|hg17|chr5 (169221919-169222683)
               

               
               1-537, gnl|Hg17|chr5 (169222248-169222786)
               

               
               1-537, gnl|loxAfr1|scaffold_30517 (7376-6633)
               

               
               1-537, gnl|mm7|chr11 (34373738-34373013)
               

               
               1-537, gnl|Mm7|chr11 (34373409-34372929)
               

               
               1-537, gnl|monDom2|scaffold_6 (31727735-31727039)
               

               
               1-537, gnl|oryCun1|scaffold_214654 (256510-257267)
               

               
               1-537, gnl|panTro1|chr4 (176473406-176474170)
               

               
               1-537, gnl|rheMac2|chr6 (166249861-166250627)
               

               
               1-537, gnl|rn3|chr10 (19404082-19403353)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	1-537, gnl\|bosTau2\|chr20 (1694709-1695242)
	1-537, gnl\|canFam2\|chr4 (45185134-45184398)
	1-537, gnl\|dasNov1\|scaffold_549 (98111-97272)
	1-537, gnl\|echTel1\|scaffold_310188 (41854-41087)
	1-537, gnl\|hg17\|chr5 (169221919-169222683)
	1-537, gnl\|Hg17\|chr5 (169222248-169222786)
	1-537, gnl\|loxAfr1\|scaffold_30517 (7376-6633)
	1-537, gnl\|mm7\|chr11 (34373738-34373013)
	1-537, gnl\|Mm7\|chr11 (34373409-34372929)
	1-537, gnl\|monDom2\|scaffold_6 (31727735-31727039)
	1-537, gnl\|oryCun1\|scaffold_214654 (256510-257267)
	1-537, gnl\|panTro1\|chr4 (176473406-176474170)
	1-537, gnl\|rheMac2\|chr6 (166249861-166250627)
	1-537, gnl\|rn3\|chr10 (19404082-19403353)