Non-Coding RNA Search

rthg12_m5.y1

Sequence:


               
               TGGCCTGGGAACTTCCATGTGCCTCGGATGTGGCCAAAGGAAAAAAAAGTTGTCCTACTG
TTTTTCTGAAAAATACCGTAAATTAAACATTAACCTGAATTGCTGTGTTTTAGCTAGTAT
GTACTAATTTGATGTAGAAAAAATTTCAAAAGAAAAAGGGTGATGATATCCTTGAAAATA
TAGGTAAATCAATCAAACGCTTTTAATTCCACCTGGCAACCAGTAACACACTCAGTGAAT
CAGCCTGAATTTGTTCCTAACTATTCAGGAGAAGTGACTCATAACCTACCTGCTACGGTT
GATATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCTGGGAACTTCCATGTGCCTCGGATGTGGCCAAAGGAAAAAAAAGTTGTCCTACTG
TTTTTCTGAAAAATACCGTAAATTAAACATTAACCTGAATTGCTGTGTTTTAGCTAGTAT
GTACTAATTTGATGTAGAAAAAATTTCAAAAGAAAAAGGGTGATGATATCCTTGAAAATA
TAGGTAAATCAATCAAACGCTTTTAATTCCACCTGGCAACCAGTAACACACTCAGTGAAT
CAGCCTGAATTTGTTCCTAACTATTCAGGAGAAGTGACTCATAACCTACCTGCTACGGTT
GATATGAT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               47-308, gnl|bosTau2|chr23 (33786052-33785792)
               

               
               47-308, gnl|canFam2|chr35 (14686591-14686773)
               

               
               47-308, gnl|dasNov1|scaffold_2113 (46838-46668)
               

               
               47-308, gnl|echTel1|scaffold_298157 (31001-30828)
               

               
               47-308, gnl|hg17|chr6 (12245097-12245275)
               

               
               47-308, gnl|Hg17|chr6 (12245121-12245349)
               

               
               47-308, gnl|loxAfr1|scaffold_8090 (42204-42385)
               

               
               47-308, gnl|monDom2|scaffold_3 (99499662-99499845)
               

               
               47-308, gnl|oryCun1|scaffold_211365 (175795-175962)
               

               
               47-308, gnl|panTro1|chr5 (12525267-12525445)
               

               
               47-308, gnl|rheMac2|chr4 (12105735-12105913)
               

               
               47-308, gnl|rn3|chr17 (28471197-28471173)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-308, gnl|bosTau2|chr23 (33786052-33785792)
               

               
               47-308, gnl|canFam2|chr35 (14686591-14686773)
               

               
               47-308, gnl|dasNov1|scaffold_2113 (46838-46668)
               

               
               47-308, gnl|echTel1|scaffold_298157 (31001-30828)
               

               
               47-308, gnl|hg17|chr6 (12245097-12245275)
               

               
               47-308, gnl|Hg17|chr6 (12245121-12245349)
               

               
               47-308, gnl|loxAfr1|scaffold_8090 (42204-42385)
               

               
               47-308, gnl|monDom2|scaffold_3 (99499662-99499845)
               

               
               47-308, gnl|oryCun1|scaffold_211365 (175795-175962)
               

               
               47-308, gnl|panTro1|chr5 (12525267-12525445)
               

               
               47-308, gnl|rheMac2|chr4 (12105735-12105913)
               

               
               47-308, gnl|rn3|chr17 (28471197-28471173)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	47-308, gnl\|bosTau2\|chr23 (33786052-33785792)
	47-308, gnl\|canFam2\|chr35 (14686591-14686773)
	47-308, gnl\|dasNov1\|scaffold_2113 (46838-46668)
	47-308, gnl\|echTel1\|scaffold_298157 (31001-30828)
	47-308, gnl\|hg17\|chr6 (12245097-12245275)
	47-308, gnl\|Hg17\|chr6 (12245121-12245349)
	47-308, gnl\|loxAfr1\|scaffold_8090 (42204-42385)
	47-308, gnl\|monDom2\|scaffold_3 (99499662-99499845)
	47-308, gnl\|oryCun1\|scaffold_211365 (175795-175962)
	47-308, gnl\|panTro1\|chr5 (12525267-12525445)
	47-308, gnl\|rheMac2\|chr4 (12105735-12105913)
	47-308, gnl\|rn3\|chr17 (28471197-28471173)