Non-Coding RNA Search

rthg15_d23.y1

Sequence:


               
               GCCAATTCCAAGAACTTACAGATTTAAAACTTGATGATAATGAATTGATTCGACTTCCTT
TCAAGATGGGACAACTGAGAAACCTGCGTTTTTTGTCTGCAGCTCGAAATAAGCTTCCAT
TTTTGCCTAGTGAATTTAAAAATTTATCTCTTGAGTACTTGGATCTTTTTGGAAATACTT
TTGAACCACCAAAAGTCCTTCCAGTTATAAAGCTGCAAGTGCCATTAACTTTATTGGAAT
CTTCCGCACGAACGATTTTATATAATAGGATTCCATATGGCTCTCATATCATCCCTTTCC
ATCTTTGCCAAGATTTGGATACTGCAAAAACCTGTGTCTGTGGAAAATTCTGTCTAAGCT
GTTTTATTCAAGGAACTACTACCATGAATCTACACTCTGTTGCTCACACGGTGGTCTTAG
TGGATAATATGGGTGGCACTGAAGCACCTGTTATCTCATACTTCTGTTCTCTAGCCTGTT
ATGTAAACTCCTGTGATATGTTAAAGTAATAAGTGATACCATAAAAGAAACTCAGTTTAC
AGACCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAATTCCAAGAACTTACAGATTTAAAACTTGATGATAATGAATTGATTCGACTTCCTT
TCAAGATGGGACAACTGAGAAACCTGCGTTTTTTGTCTGCAGCTCGAAATAAGCTTCCAT
TTTTGCCTAGTGAATTTAAAAATTTATCTCTTGAGTACTTGGATCTTTTTGGAAATACTT
TTGAACCACCAAAAGTCCTTCCAGTTATAAAGCTGCAAGTGCCATTAACTTTATTGGAAT
CTTCCGCACGAACGATTTTATATAATAGGATTCCATATGGCTCTCATATCATCCCTTTCC
ATCTTTGCCAAGATTTGGATACTGCAAAAACCTGTGTCTGTGGAAAATTCTGTCTAAGCT
GTTTTATTCAAGGAACTACTACCATGAATCTACACTCTGTTGCTCACACGGTGGTCTTAG
TGGATAATATGGGTGGCACTGAAGCACCTGTTATCTCATACTTCTGTTCTCTAGCCTGTT
ATGTAAACTCCTGTGATATGTTAAAGTAATAAGTGATACCATAAAAGAAACTCAGTTTAC
AGACCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61864863|ref|XP_614238.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61864863|ref|XP_614238.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-269, + strand, RNAz p=0.993881

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-269, + strand, RNAz p=0.993881

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC064133, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC064133, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-269, gnl|bosTau2|chr10 (29968401-29968669)
               

               
               1-269, gnl|Hg17|chr14 (49144322-49144590)
               

               
               1-269, gnl|Mm7|chr12 (67116343-67116611)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-269, gnl|bosTau2|chr10 (29968401-29968669)
               

               
               1-269, gnl|Hg17|chr14 (49144322-49144590)
               

               
               1-269, gnl|Mm7|chr12 (67116343-67116611)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	1-269, gnl\|bosTau2\|chr10 (29968401-29968669)
	1-269, gnl\|Hg17\|chr14 (49144322-49144590)
	1-269, gnl\|Mm7\|chr12 (67116343-67116611)