Non-Coding RNA Search

rthg17_e23.y1

Sequence:


               
               GGCATCTCTCTGCTGATGACATACGTGGCATTCAGTCTCTCTATGGACCCCCAGAAAAAC
ATCAACCCTCATCAAATCCTGACAGTTCAGACCCAGCTGCTTGTGACCCCAATTTGAGTT
TTGATGCTGTCACTACAGTGAGAGATAAAATATTTTTCTTTAAAGACAGGTTCTTCTGGT
GGAAGCATCCTGAGCGTCCAGAGAGGAGAGTTAGTTTAATTTCTTCTTTAGGTGCAAACT
TACCATCTGGTATTCAAGCTGCTTATGAAATTGGATTCAGAAATCATGTTTTTCTTTTTA
AAGATGATAAATACTGGTTAATCAGCAACTTGAAATCACAGTTAAATTATCCCAAGAGCA
TATATACTTTGGGCTTCCCTTACTCTGTGAAAAAAATTGATGCTGCTGTTTTTAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCATCTCTCTGCTGATGACATACGTGGCATTCAGTCTCTCTATGGACCCCCAGAAAAAC
ATCAACCCTCATCAAATCCTGACAGTTCAGACCCAGCTGCTTGTGACCCCAATTTGAGTT
TTGATGCTGTCACTACAGTGAGAGATAAAATATTTTTCTTTAAAGACAGGTTCTTCTGGT
GGAAGCATCCTGAGCGTCCAGAGAGGAGAGTTAGTTTAATTTCTTCTTTAGGTGCAAACT
TACCATCTGGTATTCAAGCTGCTTATGAAATTGGATTCAGAAATCATGTTTTTCTTTTTA
AAGATGATAAATACTGGTTAATCAGCAACTTGAAATCACAGTTAAATTATCCCAAGAGCA
TATATACTTTGGGCTTCCCTTACTCTGTGAAAAAAATTGATGCTGCTGTTTTTAACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q99745_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q99745_HUMAN

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               167-308, gnl|bosTau2|chr15 (1045558-1045699)
               

               
               167-308, gnl|canFam2|chr5 (31939207-31939042)
               

               
               167-308, gnl|dasNov1|scaffold_88934 (872-714)
               

               
               167-308, gnl|echTel1|scaffold_319990 (90426-90590)
               

               
               167-308, gnl|galGal2|chr1 (174408042-174407868)
               

               
               167-308, gnl|hg17|chr11 (102242240-102242407)
               

               
               167-308, gnl|Hg17|chr11 (102242392-102242251)
               

               
               167-308, gnl|loxAfr1|scaffold_5307 (60383-60624)
               

               
               167-308, gnl|mm7|chr9 (7352188-7352021)
               

               
               167-308, gnl|Mm7|chr9 (7352034-7352175)
               

               
               167-308, gnl|monDom2|scaffold_65 (8147866-8148033)
               

               
               167-308, gnl|oryCun1|scaffold_199490 (40985-40818)
               

               
               167-308, gnl|panTro1|chr9 (104225023-104225190)
               

               
               167-308, gnl|rheMac2|chr14 (101485772-101485939)
               

               
               167-308, gnl|rn3|chr8 (4257097-4256930)
               

               
               167-308, gnl|xenTro1|scaffold_601 (592202-592356)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-308, gnl|bosTau2|chr15 (1045558-1045699)
               

               
               167-308, gnl|canFam2|chr5 (31939207-31939042)
               

               
               167-308, gnl|dasNov1|scaffold_88934 (872-714)
               

               
               167-308, gnl|echTel1|scaffold_319990 (90426-90590)
               

               
               167-308, gnl|galGal2|chr1 (174408042-174407868)
               

               
               167-308, gnl|hg17|chr11 (102242240-102242407)
               

               
               167-308, gnl|Hg17|chr11 (102242392-102242251)
               

               
               167-308, gnl|loxAfr1|scaffold_5307 (60383-60624)
               

               
               167-308, gnl|mm7|chr9 (7352188-7352021)
               

               
               167-308, gnl|Mm7|chr9 (7352034-7352175)
               

               
               167-308, gnl|monDom2|scaffold_65 (8147866-8148033)
               

               
               167-308, gnl|oryCun1|scaffold_199490 (40985-40818)
               

               
               167-308, gnl|panTro1|chr9 (104225023-104225190)
               

               
               167-308, gnl|rheMac2|chr14 (101485772-101485939)
               

               
               167-308, gnl|rn3|chr8 (4257097-4256930)
               

               
               167-308, gnl|xenTro1|scaffold_601 (592202-592356)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	167-308, gnl\|bosTau2\|chr15 (1045558-1045699)
	167-308, gnl\|canFam2\|chr5 (31939207-31939042)
	167-308, gnl\|dasNov1\|scaffold_88934 (872-714)
	167-308, gnl\|echTel1\|scaffold_319990 (90426-90590)
	167-308, gnl\|galGal2\|chr1 (174408042-174407868)
	167-308, gnl\|hg17\|chr11 (102242240-102242407)
	167-308, gnl\|Hg17\|chr11 (102242392-102242251)
	167-308, gnl\|loxAfr1\|scaffold_5307 (60383-60624)
	167-308, gnl\|mm7\|chr9 (7352188-7352021)
	167-308, gnl\|Mm7\|chr9 (7352034-7352175)
	167-308, gnl\|monDom2\|scaffold_65 (8147866-8148033)
	167-308, gnl\|oryCun1\|scaffold_199490 (40985-40818)
	167-308, gnl\|panTro1\|chr9 (104225023-104225190)
	167-308, gnl\|rheMac2\|chr14 (101485772-101485939)
	167-308, gnl\|rn3\|chr8 (4257097-4256930)
	167-308, gnl\|xenTro1\|scaffold_601 (592202-592356)