Non-Coding RNA Search

rthg23_o7.y1

Sequence:


               
               GCGGGTCGTACGGCGGGACCCAGGACAGTGGTAGAAACAAAACGAGGACGTTTCCGAAGT
TTGCCCTTCTACTGAGATATGAGGAGTAGAGGCAAAGAAATGACCAACCCAGAGACACCC
AAAGCCACACTATTGCTGTAGCTCCAAATTCTCTCCTCATGCTTCCTTAACCTTTTCCCC
ATCTCTCACGCTGCTTCTTTACCACTCTAGATCCTTCCTGGTCCCTAATTCTGCATACAG
TTTAACTCACCCCAGGTGAGGAGACCACCTAATTTCTAGAAGGTTAGGGAAAGTGAATAG
TCACTGGTCCAAGTTGGATTCCTGTAGGTAGAAAAAAATCATCCGACTGAACTTCTGGTT
GAGGGAAGAAATTCAGGTCCAAACAAGTTAACCAGTTCCTACTCCAAATGAAACACTTTT
CACGTGTGCCATAAATATATACAGGAATAATCATTGTTAACCCTAATCATTACATGGCCA
CTTGTCTCTCAACACATAGACTTAATAAATTTATTCTCTTGGGTCCTCTGTGTGTGTGGG
GGGGTCCACAGGAGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGTCGTACGGCGGGACCCAGGACAGTGGTAGAAACAAAACGAGGACGTTTCCGAAGT
TTGCCCTTCTACTGAGATATGAGGAGTAGAGGCAAAGAAATGACCAACCCAGAGACACCC
AAAGCCACACTATTGCTGTAGCTCCAAATTCTCTCCTCATGCTTCCTTAACCTTTTCCCC
ATCTCTCACGCTGCTTCTTTACCACTCTAGATCCTTCCTGGTCCCTAATTCTGCATACAG
TTTAACTCACCCCAGGTGAGGAGACCACCTAATTTCTAGAAGGTTAGGGAAAGTGAATAG
TCACTGGTCCAAGTTGGATTCCTGTAGGTAGAAAAAAATCATCCGACTGAACTTCTGGTT
GAGGGAAGAAATTCAGGTCCAAACAAGTTAACCAGTTCCTACTCCAAATGAAACACTTTT
CACGTGTGCCATAAATATATACAGGAATAATCATTGTTAACCCTAATCATTACATGGCCA
CTTGTCTCTCAACACATAGACTTAATAAATTTATTCTCTTGGGTCCTCTGTGTGTGTGGG
GGGGTCCACAGGAGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-171, - strand, RNAz p=0.981292

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-171, - strand, RNAz p=0.981292

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-524, gnl|bosTau2|chr23 (20968534-20968021)
               

               
               3-524, gnl|Hg17|chr6 (30403202-30403730)
               

               
               3-524, gnl|Mm7|chr17 (34419371-34418818)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-524, gnl|bosTau2|chr23 (20968534-20968021)
               

               
               3-524, gnl|Hg17|chr6 (30403202-30403730)
               

               
               3-524, gnl|Mm7|chr17 (34419371-34418818)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	3-524, gnl\|bosTau2\|chr23 (20968534-20968021)
	3-524, gnl\|Hg17\|chr6 (30403202-30403730)
	3-524, gnl\|Mm7\|chr17 (34419371-34418818)