Non-Coding RNA Search

rthg24_a18.y1

Sequence:


               
               ACAATGGGGCTGACTTCATATAAATGGTTAGCAGTTTTGTAGAGCTGAGAAAAAAAACCT
ACTGAGGGTATTTCAAGGTCGTTTTGATAGGCTGTCTTCTGACGCTCGGTCCTCAGTTTA
AAGCTATTTCCTAGTAAAGGTAATGCTCGTCCACGCCAAGTTAGTATAAAAATGTATTTC
TTTTTGCTTCACATCAAAATTAAACATGGTAGGACATAGAACTTACCCTTTCTGAAGTAT
ACGTATGTTGCTTATATTTCCTCAAAGAAATTGTTTTCTAGTGTGACTTGTGGGAGTCAG
AAAGGGTGAATGCTTCTCCCCTGAGCCATTGTTATGCTTTGCTAGATGAAATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAATGGGGCTGACTTCATATAAATGGTTAGCAGTTTTGTAGAGCTGAGAAAAAAAACCT
ACTGAGGGTATTTCAAGGTCGTTTTGATAGGCTGTCTTCTGACGCTCGGTCCTCAGTTTA
AAGCTATTTCCTAGTAAAGGTAATGCTCGTCCACGCCAAGTTAGTATAAAAATGTATTTC
TTTTTGCTTCACATCAAAATTAAACATGGTAGGACATAGAACTTACCCTTTCTGAAGTAT
ACGTATGTTGCTTATATTTCCTCAAAGAAATTGTTTTCTAGTGTGACTTGTGGGAGTCAG
AAAGGGTGAATGCTTCTCCCCTGAGCCATTGTTATGCTTTGCTAGATGAAATATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               216-313, + strand, RNAz p=0.598376

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               216-313, + strand, RNAz p=0.598376

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               5-204, gnl|bosTau2|chr4 (8061429-8061630)
               

               
               5-204, gnl|canFam2|chr14 (34129001-34129261)
               

               
               5-204, gnl|hg17|chr7 (16481328-16481577)
               

               
               5-204, gnl|Hg17|chr7 (16481447-16481623)
               

               
               5-204, gnl|loxAfr1|scaffold_9362 (55297-55541)
               

               
               5-204, gnl|oryCun1|scaffold_179348 (116798-117011)
               

               
               5-204, gnl|panTro1|chr6 (17366100-17366349)
               

               
               5-204, gnl|rheMac2|chr3 (109444534-109444285)
               


               
               216-349, gnl|bosTau2|chr4 (8061893-8062034)
               

               
               216-349, gnl|canFam2|chr14 (34129316-34129644)
               

               
               216-349, gnl|echTel1|scaffold_284229 (25898-26224)
               

               
               216-349, gnl|hg17|chr7 (16481642-16481984)
               

               
               216-349, gnl|Hg17|chr7 (16481681-16481828)
               

               
               216-349, gnl|loxAfr1|scaffold_9362 (55593-55885)
               

               
               216-349, gnl|oryCun1|scaffold_179348 (117058-117384)
               

               
               216-349, gnl|panTro1|chr6 (17366414-17366756)
               

               
               216-349, gnl|rheMac2|chr3 (109444219-109443877)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-204, gnl|bosTau2|chr4 (8061429-8061630)
               

               
               5-204, gnl|canFam2|chr14 (34129001-34129261)
               

               
               5-204, gnl|hg17|chr7 (16481328-16481577)
               

               
               5-204, gnl|Hg17|chr7 (16481447-16481623)
               

               
               5-204, gnl|loxAfr1|scaffold_9362 (55297-55541)
               

               
               5-204, gnl|oryCun1|scaffold_179348 (116798-117011)
               

               
               5-204, gnl|panTro1|chr6 (17366100-17366349)
               

               
               5-204, gnl|rheMac2|chr3 (109444534-109444285)
               


               
               216-349, gnl|bosTau2|chr4 (8061893-8062034)
               

               
               216-349, gnl|canFam2|chr14 (34129316-34129644)
               

               
               216-349, gnl|echTel1|scaffold_284229 (25898-26224)
               

               
               216-349, gnl|hg17|chr7 (16481642-16481984)
               

               
               216-349, gnl|Hg17|chr7 (16481681-16481828)
               

               
               216-349, gnl|loxAfr1|scaffold_9362 (55593-55885)
               

               
               216-349, gnl|oryCun1|scaffold_179348 (117058-117384)
               

               
               216-349, gnl|panTro1|chr6 (17366414-17366756)
               

               
               216-349, gnl|rheMac2|chr3 (109444219-109443877)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	5-204, gnl\|bosTau2\|chr4 (8061429-8061630)
	5-204, gnl\|canFam2\|chr14 (34129001-34129261)
	5-204, gnl\|hg17\|chr7 (16481328-16481577)
	5-204, gnl\|Hg17\|chr7 (16481447-16481623)
	5-204, gnl\|loxAfr1\|scaffold_9362 (55297-55541)
	5-204, gnl\|oryCun1\|scaffold_179348 (116798-117011)
	5-204, gnl\|panTro1\|chr6 (17366100-17366349)
	5-204, gnl\|rheMac2\|chr3 (109444534-109444285)

	216-349, gnl\|bosTau2\|chr4 (8061893-8062034)
	216-349, gnl\|canFam2\|chr14 (34129316-34129644)
	216-349, gnl\|echTel1\|scaffold_284229 (25898-26224)
	216-349, gnl\|hg17\|chr7 (16481642-16481984)
	216-349, gnl\|Hg17\|chr7 (16481681-16481828)
	216-349, gnl\|loxAfr1\|scaffold_9362 (55593-55885)
	216-349, gnl\|oryCun1\|scaffold_179348 (117058-117384)
	216-349, gnl\|panTro1\|chr6 (17366414-17366756)
	216-349, gnl\|rheMac2\|chr3 (109444219-109443877)