Non-Coding RNA Search

rthg29_p3.y1

Sequence:


               
               TTTCTTTTAAGTGTCTTCCTTTTCTTTTATCAATTCTTACTGTCTCCTCTTCATAGGATA
AAATTTTAATGCAGCCAAGTAGAAAAAAATTTTTCAACCAATTTCTTATTGGGTCTAGAT
TCCTGATTTTATTTATAACATGGACTGTATATTTGATTGTAAACCTATCTTGACATAATG
CATGATGTCTTTCATATTTAAATTAATGATACTTAGTAACAAGTAAATTGATTCTTTTCA
CATTTGTCTTCACCAGTGTATTCAGTATCCAAAGAAAGTTCTTTGGCAAGTGCATAACCT
GACTGAAATGTCAGAGAACAGATGGAAAGGAGTTCCACAAGCATTGGCTGAATAGTAAAA
GTTTGACTATCTGAAAACCAGCTTTACTGGCTTTTCTTTCCTCCAAAACTAATAAGAGGA
GCTAAACTTTCAAATGAAAGAACAGCTGTTTTTAGCCTGGTAGTCAGTAGGAAGAGATAA
AAGCCCTTTCAAATAAAGTCTTAACCCTATGGTTTATTTTTGAAGGGCTGCAAGTTCTCA
GAACCTTGAGAATATCGTGTGGTCAGATGTAAATACAAAAAAAAAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTTTTAAGTGTCTTCCTTTTCTTTTATCAATTCTTACTGTCTCCTCTTCATAGGATA
AAATTTTAATGCAGCCAAGTAGAAAAAAATTTTTCAACCAATTTCTTATTGGGTCTAGAT
TCCTGATTTTATTTATAACATGGACTGTATATTTGATTGTAAACCTATCTTGACATAATG
CATGATGTCTTTCATATTTAAATTAATGATACTTAGTAACAAGTAAATTGATTCTTTTCA
CATTTGTCTTCACCAGTGTATTCAGTATCCAAAGAAAGTTCTTTGGCAAGTGCATAACCT
GACTGAAATGTCAGAGAACAGATGGAAAGGAGTTCCACAAGCATTGGCTGAATAGTAAAA
GTTTGACTATCTGAAAACCAGCTTTACTGGCTTTTCTTTCCTCCAAAACTAATAAGAGGA
GCTAAACTTTCAAATGAAAGAACAGCTGTTTTTAGCCTGGTAGTCAGTAGGAAGAGATAA
AAGCCCTTTCAAATAAAGTCTTAACCCTATGGTTTATTTTTGAAGGGCTGCAAGTTCTCA
GAACCTTGAGAATATCGTGTGGTCAGATGTAAATACAAAAAAAAAAAAAC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               220-371, + strand, RNAz p=0.94904
               

               
               475-587, - strand, RNAz p=0.540115
               

               
               496-589, + strand, RNAz p=0.988088

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               220-371, + strand, RNAz p=0.94904
               

               
               475-587, - strand, RNAz p=0.540115
               

               
               496-589, + strand, RNAz p=0.988088

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               518-583, + strand, RNAmicro p=0.999652

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               518-583, + strand, RNAmicro p=0.999652

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               34-371, gnl|bosTau2|chrX (40103349-40103692)
               

               
               34-371, gnl|Hg17|chr15 (55119663-55119991)
               

               
               34-371, gnl|Mm7|chr9 (72068596-72068277)
               


               
               380-589, gnl|bosTau2|chrX (40103720-40103935)
               

               
               380-589, gnl|canFam2|chr30 (25209054-25209602)
               

               
               380-589, gnl|dasNov1|scaffold_20395 (7384-6940)
               

               
               380-589, gnl|echTel1|scaffold_276823 (18265-18743)
               

               
               380-589, gnl|hg17|chr15 (55119675-55120142)
               

               
               380-589, gnl|Hg17|chr15 (55120000-55120203)
               

               
               380-589, gnl|loxAfr1|scaffold_4450 (41233-40745)
               

               
               380-589, gnl|mm7|chr9 (72068591-72068128)
               

               
               380-589, gnl|Mm7|chr9 (72068262-72067938)
               

               
               380-589, gnl|panTro1|chr16 (55467361-55467829)
               

               
               380-589, gnl|rheMac2|chr7 (35365453-35365926)
               

               
               380-589, gnl|rn3|chr8 (76754358-76754796)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-371, gnl|bosTau2|chrX (40103349-40103692)
               

               
               34-371, gnl|Hg17|chr15 (55119663-55119991)
               

               
               34-371, gnl|Mm7|chr9 (72068596-72068277)
               


               
               380-589, gnl|bosTau2|chrX (40103720-40103935)
               

               
               380-589, gnl|canFam2|chr30 (25209054-25209602)
               

               
               380-589, gnl|dasNov1|scaffold_20395 (7384-6940)
               

               
               380-589, gnl|echTel1|scaffold_276823 (18265-18743)
               

               
               380-589, gnl|hg17|chr15 (55119675-55120142)
               

               
               380-589, gnl|Hg17|chr15 (55120000-55120203)
               

               
               380-589, gnl|loxAfr1|scaffold_4450 (41233-40745)
               

               
               380-589, gnl|mm7|chr9 (72068591-72068128)
               

               
               380-589, gnl|Mm7|chr9 (72068262-72067938)
               

               
               380-589, gnl|panTro1|chr16 (55467361-55467829)
               

               
               380-589, gnl|rheMac2|chr7 (35365453-35365926)
               

               
               380-589, gnl|rn3|chr8 (76754358-76754796)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	220-371, + strand, RNAz p=0.94904
	475-587, - strand, RNAz p=0.540115
	496-589, + strand, RNAz p=0.988088

	34-371, gnl\|bosTau2\|chrX (40103349-40103692)
	34-371, gnl\|Hg17\|chr15 (55119663-55119991)
	34-371, gnl\|Mm7\|chr9 (72068596-72068277)

	380-589, gnl\|bosTau2\|chrX (40103720-40103935)
	380-589, gnl\|canFam2\|chr30 (25209054-25209602)
	380-589, gnl\|dasNov1\|scaffold_20395 (7384-6940)
	380-589, gnl\|echTel1\|scaffold_276823 (18265-18743)
	380-589, gnl\|hg17\|chr15 (55119675-55120142)
	380-589, gnl\|Hg17\|chr15 (55120000-55120203)
	380-589, gnl\|loxAfr1\|scaffold_4450 (41233-40745)
	380-589, gnl\|mm7\|chr9 (72068591-72068128)
	380-589, gnl\|Mm7\|chr9 (72068262-72067938)
	380-589, gnl\|panTro1\|chr16 (55467361-55467829)
	380-589, gnl\|rheMac2\|chr7 (35365453-35365926)
	380-589, gnl\|rn3\|chr8 (76754358-76754796)