Non-Coding RNA Search

rthg32_c22.y1

Sequence:


               
               TCTTTGCCATTCTGGAGCTAGGACTCACTGCAAACATTTAGGCTTTGTCTTTAATGGTCT
TTATTTCAAAGCTGGCAAAAGCTTAACTGGAGATGTGACAGGCGCCGGGTTCTCTGTGTG
CCCACAGATGTCTGTCATCTCTGTCGTGGTCACTGTTTGCCATCTCGGGGTTGTGGGTGA
CAGATGACACGCACACCCCCTCTTCTTGGTTGGGATAGAAACTCCTGGGATGGACAGTGG
CCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTGCCATTCTGGAGCTAGGACTCACTGCAAACATTTAGGCTTTGTCTTTAATGGTCT
TTATTTCAAAGCTGGCAAAAGCTTAACTGGAGATGTGACAGGCGCCGGGTTCTCTGTGTG
CCCACAGATGTCTGTCATCTCTGTCGTGGTCACTGTTTGCCATCTCGGGGTTGTGGGTGA
CAGATGACACGCACACCCCCTCTTCTTGGTTGGGATAGAAACTCCTGGGATGGACAGTGG
CCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               138-256, + strand, RNAz p=0.829663

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               138-256, + strand, RNAz p=0.829663

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               7-256, gnl|bosTau2|chr3 (60735276-60735524)
               

               
               7-256, gnl|canFam2|chr5 (57691977-57691254)
               

               
               7-256, gnl|dasNov1|scaffold_34728 (43663-42943)
               

               
               7-256, gnl|echTel1|scaffold_306420 (75610-76253)
               

               
               7-256, gnl|hg17|chr1 (54554139-54554808)
               

               
               7-256, gnl|Hg17|chr1 (54554723-54554505)
               

               
               7-256, gnl|loxAfr1|scaffold_20987 (39655-40371)
               

               
               7-256, gnl|mm7|chr4 (106315679-106315158)
               

               
               7-256, gnl|oryCun1|scaffold_202325 (31728-31147)
               

               
               7-256, gnl|panTro1|chr1 (52834454-52835119)
               

               
               7-256, gnl|rheMac2|chr1 (57256079-57256750)
               

               
               7-256, gnl|rn3|chr5 (128020933-128020365)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-256, gnl|bosTau2|chr3 (60735276-60735524)
               

               
               7-256, gnl|canFam2|chr5 (57691977-57691254)
               

               
               7-256, gnl|dasNov1|scaffold_34728 (43663-42943)
               

               
               7-256, gnl|echTel1|scaffold_306420 (75610-76253)
               

               
               7-256, gnl|hg17|chr1 (54554139-54554808)
               

               
               7-256, gnl|Hg17|chr1 (54554723-54554505)
               

               
               7-256, gnl|loxAfr1|scaffold_20987 (39655-40371)
               

               
               7-256, gnl|mm7|chr4 (106315679-106315158)
               

               
               7-256, gnl|oryCun1|scaffold_202325 (31728-31147)
               

               
               7-256, gnl|panTro1|chr1 (52834454-52835119)
               

               
               7-256, gnl|rheMac2|chr1 (57256079-57256750)
               

               
               7-256, gnl|rn3|chr5 (128020933-128020365)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               thg (0.126791)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	7-256, gnl\|bosTau2\|chr3 (60735276-60735524)
	7-256, gnl\|canFam2\|chr5 (57691977-57691254)
	7-256, gnl\|dasNov1\|scaffold_34728 (43663-42943)
	7-256, gnl\|echTel1\|scaffold_306420 (75610-76253)
	7-256, gnl\|hg17\|chr1 (54554139-54554808)
	7-256, gnl\|Hg17\|chr1 (54554723-54554505)
	7-256, gnl\|loxAfr1\|scaffold_20987 (39655-40371)
	7-256, gnl\|mm7\|chr4 (106315679-106315158)
	7-256, gnl\|oryCun1\|scaffold_202325 (31728-31147)
	7-256, gnl\|panTro1\|chr1 (52834454-52835119)
	7-256, gnl\|rheMac2\|chr1 (57256079-57256750)
	7-256, gnl\|rn3\|chr5 (128020933-128020365)