Non-Coding RNA Search

rthg33_m3.y1

Sequence:


               
               TTATCTGCCTATCTTGTTTATGAAATTTGGGGCTGCCTTTCCTGCAGTCTGTTCGCCTCT
CAAATCTTTCCCAGCTCCCATTTCCATATTTCTGCGTGCATGTTCTTTGTTAATCACTTG
GCAAGTGCTTATTTGAATATTAAAAATTTCTTTAATCATCAAAGGCAGGAGCACAGTCTC
ATGAATATTCATATTTTCCCCCTCCTCAGACTAGAGTCTAGTTCATTACCCTGCAGTAAA
AGCCAAACAGCCATCAATCGTCCTCATTACAGGCTCTGGCGTTTTGATTGGCTGCCTGCT
GCCCAGAGCTTTTTTATTTTTTATTTTTTCCTCTTCTCCTATGAGCTGTCTCATACCTGC
CAACAACCCCCCCCACCGAAAAAAGTCAACAATGCAAGAATAAATTTCTCCCGTTGAAAA
ACAACTCTGCAAACTTGTCAAACAGTCCTCGTGGTTTGCTGCCACCAAAGCAGCCACCAG
CACTACCTGCCCCCACCTGCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATCTGCCTATCTTGTTTATGAAATTTGGGGCTGCCTTTCCTGCAGTCTGTTCGCCTCT
CAAATCTTTCCCAGCTCCCATTTCCATATTTCTGCGTGCATGTTCTTTGTTAATCACTTG
GCAAGTGCTTATTTGAATATTAAAAATTTCTTTAATCATCAAAGGCAGGAGCACAGTCTC
ATGAATATTCATATTTTCCCCCTCCTCAGACTAGAGTCTAGTTCATTACCCTGCAGTAAA
AGCCAAACAGCCATCAATCGTCCTCATTACAGGCTCTGGCGTTTTGATTGGCTGCCTGCT
GCCCAGAGCTTTTTTATTTTTTATTTTTTCCTCTTCTCCTATGAGCTGTCTCATACCTGC
CAACAACCCCCCCCACCGAAAAAAGTCAACAATGCAAGAATAAATTTCTCCCGTTGAAAA
ACAACTCTGCAAACTTGTCAAACAGTCCTCGTGGTTTGCTGCCACCAAAGCAGCCACCAG
CACTACCTGCCCCCACCTGCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               79-197, - strand, RNAz p=0.772126
               

               
               237-377, - strand, RNAz p=0.995189

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, - strand, RNAz p=0.772126
               

               
               237-377, - strand, RNAz p=0.995189

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-517, gnl|bosTau2|chr21 (43886209-43885679)
               

               
               1-517, gnl|Hg17|chr14 (98772316-98771769)
               

               
               1-517, gnl|Mm7|chr12 (105492504-105491961)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-517, gnl|bosTau2|chr21 (43886209-43885679)
               

               
               1-517, gnl|Hg17|chr14 (98772316-98771769)
               

               
               1-517, gnl|Mm7|chr12 (105492504-105491961)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	79-197, - strand, RNAz p=0.772126
	237-377, - strand, RNAz p=0.995189

	1-517, gnl\|bosTau2\|chr21 (43886209-43885679)
	1-517, gnl\|Hg17\|chr14 (98772316-98771769)
	1-517, gnl\|Mm7\|chr12 (105492504-105491961)