Non-Coding RNA Search

rthg35_c8.y1

Sequence:


               
               ATCGATTCACAGAAAGAAACACTCTTATCAAGAAGAGGAGAAGACAGTGACTACCGATCA
CAGTTGTCTAAAAAAAACTATGAACTTGTCCAGTATCTGGATGAAATTCAGACTTTAACA
GAAGCTAATGAGAAAATTGAACTTCAGAATCAAGAAATGAGAAAAAATCTAGAAGAGTCT
GTACAGGAAATGGAAAAGATGACTGATGAATATAATAGGATGAAAGCTGTTGTACATCAA
ACAGATAACATAATGGACCAGTTAAAAAAAGAAAATGATCATTATCGGCTTCAAGTGCAG
GAACTTACAGATCTTCTAAAAGCAAAAAATGAAGAAGATGATCCAATCATGGCCGCTGTC
AATGCAAAAGTAGAAGAATGGAAGGTGCTTCATTCAGATACGACAATAGCTTTTTCTTTT
TCATTTTAGATTTCAATTTTTTAGTCTTGATTTTCTTTAAAGGCCTTGTAATAGTTAATG
ACATTTTTATTAGGTATTCTTAAAAGCACATGAAATGTCTTAGGTAGAGAAGCTCTAAGA
GTAGTCCTGTGTAGTCTTCTAGCTGTCTTTTGCTGAATGAGCTTTCCCGTATCAGTGAGT
TGAACTTAAAATTTTCTGACAGAAGTCTAAGTCCAAAATATATTTATCATCTAAAATTGG
TAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGATTCACAGAAAGAAACACTCTTATCAAGAAGAGGAGAAGACAGTGACTACCGATCA
CAGTTGTCTAAAAAAAACTATGAACTTGTCCAGTATCTGGATGAAATTCAGACTTTAACA
GAAGCTAATGAGAAAATTGAACTTCAGAATCAAGAAATGAGAAAAAATCTAGAAGAGTCT
GTACAGGAAATGGAAAAGATGACTGATGAATATAATAGGATGAAAGCTGTTGTACATCAA
ACAGATAACATAATGGACCAGTTAAAAAAAGAAAATGATCATTATCGGCTTCAAGTGCAG
GAACTTACAGATCTTCTAAAAGCAAAAAATGAAGAAGATGATCCAATCATGGCCGCTGTC
AATGCAAAAGTAGAAGAATGGAAGGTGCTTCATTCAGATACGACAATAGCTTTTTCTTTT
TCATTTTAGATTTCAATTTTTTAGTCTTGATTTTCTTTAAAGGCCTTGTAATAGTTAATG
ACATTTTTATTAGGTATTCTTAAAAGCACATGAAATGTCTTAGGTAGAGAAGCTCTAAGA
GTAGTCCTGTGTAGTCTTCTAGCTGTCTTTTGCTGAATGAGCTTTCCCGTATCAGTGAGT
TGAACTTAAAATTTTCTGACAGAAGTCTAAGTCCAAAATATATTTATCATCTAAAATTGG
TAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61844557|ref|XP_584813.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61844557|ref|XP_584813.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               149-268, + strand, RNAz p=0.870295

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               149-268, + strand, RNAz p=0.870295

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               110-296, gnl|bosTau2|chr10 (47376400-47376214)
               

               
               110-296, gnl|Hg17|chr12 (87026123-87025937)
               

               
               110-296, gnl|Mm7|chr10 (99983329-99983515)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-296, gnl|bosTau2|chr10 (47376400-47376214)
               

               
               110-296, gnl|Hg17|chr12 (87026123-87025937)
               

               
               110-296, gnl|Mm7|chr10 (99983329-99983515)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	110-296, gnl\|bosTau2\|chr10 (47376400-47376214)
	110-296, gnl\|Hg17\|chr12 (87026123-87025937)
	110-296, gnl\|Mm7\|chr10 (99983329-99983515)