Non-Coding RNA Search

rthg35_e20.y1

Sequence:


               
               ATTTTTTTTCTTCCTTTCCACATCAAATTTAAGTTCTCATGGGCATACTGTTTTCCTGAC
AGAGTGGTTGTGAACAAATAGATTTCTCTTATTTTGCATATAGGATTTCTTTTTTCTTGC
TCTTTCCTTTTCCATTTTCTTTTTCATGAATGCAAAGGAATAGCCACAGATTCTTGTGCT
ATGATTTAGGAGTCACTGATGATATAAAGGATTGCATATATGTGTTTAATGCAAATTTTC
ATTATACCGTTAGGCCCTTAGGAACAAAACATAGCATTTTCCCAGAAAAAAAAGTGTATC
GTGAAGCTAACTTGAACTTGAGGAATCCTACTTGCAAGGACCCCTTCAAAGACATTATGT
AATTTTATATTATTCTTCTTGAGGACGGTTTCCAGAAAAATAGGAGTTTCAGGAGGAACA
AAACTTGGTTTAGTTGTTGTTTTTCCCCACATCAATGGAAATAAGTCTTTAGTCTATAGC
CCCAGGGACAAAAGCATTTTTAGTCCAAGAGTACTCTTCCTCCCTCACTGACTTTAAAGA
CATTCCTCTGGTTTTCTTTAGCTGAAATGTGCTATCATTGTTTTACAACATTGTAATATG
CTAATTTTGAAGTTACTATCTTTGTGTAAGGTAATAAGTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTTTTCTTCCTTTCCACATCAAATTTAAGTTCTCATGGGCATACTGTTTTCCTGAC
AGAGTGGTTGTGAACAAATAGATTTCTCTTATTTTGCATATAGGATTTCTTTTTTCTTGC
TCTTTCCTTTTCCATTTTCTTTTTCATGAATGCAAAGGAATAGCCACAGATTCTTGTGCT
ATGATTTAGGAGTCACTGATGATATAAAGGATTGCATATATGTGTTTAATGCAAATTTTC
ATTATACCGTTAGGCCCTTAGGAACAAAACATAGCATTTTCCCAGAAAAAAAAGTGTATC
GTGAAGCTAACTTGAACTTGAGGAATCCTACTTGCAAGGACCCCTTCAAAGACATTATGT
AATTTTATATTATTCTTCTTGAGGACGGTTTCCAGAAAAATAGGAGTTTCAGGAGGAACA
AAACTTGGTTTAGTTGTTGTTTTTCCCCACATCAATGGAAATAAGTCTTTAGTCTATAGC
CCCAGGGACAAAAGCATTTTTAGTCCAAGAGTACTCTTCCTCCCTCACTGACTTTAAAGA
CATTCCTCTGGTTTTCTTTAGCTGAAATGTGCTATCATTGTTTTACAACATTGTAATATG
CTAATTTTGAAGTTACTATCTTTGTGTAAGGTAATAAGTGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-115, + strand, RNAz p=0.906882

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-115, + strand, RNAz p=0.906882

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-642, gnl|bosTau2|chr21 (11562627-11561994)
               

               
               4-642, gnl|Hg17|chr3 (166962619-166961970)
               

               
               4-642, gnl|Mm7|chr3 (73734536-73733916)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-642, gnl|bosTau2|chr21 (11562627-11561994)
               

               
               4-642, gnl|Hg17|chr3 (166962619-166961970)
               

               
               4-642, gnl|Mm7|chr3 (73734536-73733916)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	4-642, gnl\|bosTau2\|chr21 (11562627-11561994)
	4-642, gnl\|Hg17\|chr3 (166962619-166961970)
	4-642, gnl\|Mm7\|chr3 (73734536-73733916)