Non-Coding RNA Search

rton1201b_k14.y1

Sequence:


               
               CTTGCTTTTGCTTCCTTCTCAAGACTAAAAGGTCTTATTTTTCTGCTGTTCTGAGAATTG
ATCACCACCATCCTCTTGATTGGCTCAATcagtggttctcaatcaagggcaattttgcac
ctcaggggacacttggcaatgtctggagatattttaattgtcacaacttcggggaccagc
gtgctattggcatctcgtagatagaggtcatggatgctactgaacatcccacaacacgca
gggcagccAAATAACATACAGCAAAAACAAGACAGCCAAAGTGTCAGCTGTGCCAATTGA
GAAACCATGGACCTTGGGAGTACCAGAGCAAAGCAAGCAACTGGGGTAAAAATAACCAGT
GCTGGACCTTCTCTTAAATTACTAACAGTTAGCAGAGGTGGCAACTGATGTTTTTCACCC
ATCCTCCAAGGGGGAGAAGGGAAGAGAGCCTTAGCACCAGGTAAATCATTCCTGAACGAG
TATAAAGCCCCTCCACCATTTTTCTTCTCGCTGATTTAAACATGAAAGCCATGTGATTAT
GCAGTGATTACAGTCCGCCCGGGGTTTTGGAAGTCCTCCTTCTCCACTCACAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCTTTTGCTTCCTTCTCAAGACTAAAAGGTCTTATTTTTCTGCTGTTCTGAGAATTG
ATCACCACCATCCTCTTGATTGGCTCAATcagtggttctcaatcaagggcaattttgcac
ctcaggggacacttggcaatgtctggagatattttaattgtcacaacttcggggaccagc
gtgctattggcatctcgtagatagaggtcatggatgctactgaacatcccacaacacgca
gggcagccAAATAACATACAGCAAAAACAAGACAGCCAAAGTGTCAGCTGTGCCAATTGA
GAAACCATGGACCTTGGGAGTACCAGAGCAAAGCAAGCAACTGGGGTAAAAATAACCAGT
GCTGGACCTTCTCTTAAATTACTAACAGTTAGCAGAGGTGGCAACTGATGTTTTTCACCC
ATCCTCCAAGGGGGAGAAGGGAAGAGAGCCTTAGCACCAGGTAAATCATTCCTGAACGAG
TATAAAGCCCCTCCACCATTTTTCTTCTCGCTGATTTAAACATGAAAGCCATGTGATTAT
GCAGTGATTACAGTCCGCCCGGGGTTTTGGAAGTCCTCCTTCTCCACTCACAGGC

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               24-332, gnl|bosTau2|chr15 (40413658-40413979)
               

               
               24-332, gnl|canFam2|chr18 (36214511-36213987)
               

               
               24-332, gnl|dasNov1|scaffold_18308 (9023-9602)
               

               
               24-332, gnl|echTel1|scaffold_311479 (44245-43495)
               

               
               24-332, gnl|hg17|chr11 (34637720-34638283)
               

               
               24-332, gnl|Hg17|chr11 (34638205-34637892)
               

               
               24-332, gnl|mm7|chr2 (103116901-103116389)
               

               
               24-332, gnl|Mm7|chr2 (103116467-103116761)
               

               
               24-332, gnl|oryCun1|scaffold_214553 (113259-112726)
               

               
               24-332, gnl|panTro1|chr9 (35034607-35035170)
               

               
               24-332, gnl|rheMac2|chr14 (37165081-37164514)
               

               
               24-332, gnl|rn3|chr3 (88415955-88415447)
               


               
               335-589, gnl|bosTau2|chr15 (40414010-40414264)
               

               
               335-589, gnl|Hg17|chr11 (34637843-34637590)
               

               
               335-589, gnl|Mm7|chr2 (103116810-103117018)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-332, gnl|bosTau2|chr15 (40413658-40413979)
               

               
               24-332, gnl|canFam2|chr18 (36214511-36213987)
               

               
               24-332, gnl|dasNov1|scaffold_18308 (9023-9602)
               

               
               24-332, gnl|echTel1|scaffold_311479 (44245-43495)
               

               
               24-332, gnl|hg17|chr11 (34637720-34638283)
               

               
               24-332, gnl|Hg17|chr11 (34638205-34637892)
               

               
               24-332, gnl|mm7|chr2 (103116901-103116389)
               

               
               24-332, gnl|Mm7|chr2 (103116467-103116761)
               

               
               24-332, gnl|oryCun1|scaffold_214553 (113259-112726)
               

               
               24-332, gnl|panTro1|chr9 (35034607-35035170)
               

               
               24-332, gnl|rheMac2|chr14 (37165081-37164514)
               

               
               24-332, gnl|rn3|chr3 (88415955-88415447)
               


               
               335-589, gnl|bosTau2|chr15 (40414010-40414264)
               

               
               335-589, gnl|Hg17|chr11 (34637843-34637590)
               

               
               335-589, gnl|Mm7|chr2 (103116810-103117018)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ton (0.1755)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	24-332, gnl\|bosTau2\|chr15 (40413658-40413979)
	24-332, gnl\|canFam2\|chr18 (36214511-36213987)
	24-332, gnl\|dasNov1\|scaffold_18308 (9023-9602)
	24-332, gnl\|echTel1\|scaffold_311479 (44245-43495)
	24-332, gnl\|hg17\|chr11 (34637720-34638283)
	24-332, gnl\|Hg17\|chr11 (34638205-34637892)
	24-332, gnl\|mm7\|chr2 (103116901-103116389)
	24-332, gnl\|Mm7\|chr2 (103116467-103116761)
	24-332, gnl\|oryCun1\|scaffold_214553 (113259-112726)
	24-332, gnl\|panTro1\|chr9 (35034607-35035170)
	24-332, gnl\|rheMac2\|chr14 (37165081-37164514)
	24-332, gnl\|rn3\|chr3 (88415955-88415447)

	335-589, gnl\|bosTau2\|chr15 (40414010-40414264)
	335-589, gnl\|Hg17\|chr11 (34637843-34637590)
	335-589, gnl\|Mm7\|chr2 (103116810-103117018)