Non-Coding RNA Search

rton1217b_d23.y1

Sequence:


               
               GGTTACCTGAAGCTAGGGTACCAGAGGGAGCTGATGTACAAACACAGCGACGGCTCCTAC
AGTGCCTTTGGGGAGAGGGATGGAAGTGGAAACACATGGCTGACAGCCTTCGTCACCAAA
TGCTTTGGCCAGGCTCAGAAATTCATCTTCATTGATGACAAGAACATTGAGGATGCTCTT
AAGTGGATGGCGGGAAACCAGCTCTCCAGCGGCTGCTACGCCAACGTGGGAAAGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTACCTGAAGCTAGGGTACCAGAGGGAGCTGATGTACAAACACAGCGACGGCTCCTAC
AGTGCCTTTGGGGAGAGGGATGGAAGTGGAAACACATGGCTGACAGCCTTCGTCACCAAA
TGCTTTGGCCAGGCTCAGAAATTCATCTTCATTGATGACAAGAACATTGAGGATGCTCTT
AAGTGGATGGCGGGAAACCAGCTCTCCAGCGGCTGCTACGCCAACGTGGGAAAGCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61809445|ref|XP_602142.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61809445|ref|XP_602142.1|

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               98-238, gnl|bosTau2|chr5 (59612335-59612195)
               

               
               98-238, gnl|canFam2|chr27 (39881802-39881636)
               

               
               98-238, gnl|danRer3|chr15 (24928978-24929144)
               

               
               98-238, gnl|dasNov1|scaffold_17983 (40547-40381)
               

               
               98-238, gnl|echTel1|scaffold_288753 (55683-55517)
               

               
               98-238, gnl|fr1|chrUn (125215677-125215842)
               

               
               98-238, gnl|galGal2|chr1 (68378041-68377875)
               

               
               98-238, gnl|hg17|chr12 (8901802-8901968)
               

               
               98-238, gnl|Hg17|chr12 (8901808-8901948)
               

               
               98-238, gnl|loxAfr1|scaffold_10616 (16557-16391)
               

               
               98-238, gnl|mm7|chr6 (122409096-122408929)
               

               
               98-238, gnl|Mm7|chr6 (122409088-122408947)
               

               
               98-238, gnl|oryCun1|scaffold_209455 (51043-50877)
               

               
               98-238, gnl|panTro1|chrUn_random (58201025-58200859)
               

               
               98-238, gnl|rheMac2|chr11 (8995968-8996134)
               

               
               98-238, gnl|rn3|chr4 (158797573-158797417)
               

               
               98-238, gnl|tetNig1|chr16 (8119761-8119601)
               

               
               98-238, gnl|xenTro1|scaffold_337 (597189-597355)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-238, gnl|bosTau2|chr5 (59612335-59612195)
               

               
               98-238, gnl|canFam2|chr27 (39881802-39881636)
               

               
               98-238, gnl|danRer3|chr15 (24928978-24929144)
               

               
               98-238, gnl|dasNov1|scaffold_17983 (40547-40381)
               

               
               98-238, gnl|echTel1|scaffold_288753 (55683-55517)
               

               
               98-238, gnl|fr1|chrUn (125215677-125215842)
               

               
               98-238, gnl|galGal2|chr1 (68378041-68377875)
               

               
               98-238, gnl|hg17|chr12 (8901802-8901968)
               

               
               98-238, gnl|Hg17|chr12 (8901808-8901948)
               

               
               98-238, gnl|loxAfr1|scaffold_10616 (16557-16391)
               

               
               98-238, gnl|mm7|chr6 (122409096-122408929)
               

               
               98-238, gnl|Mm7|chr6 (122409088-122408947)
               

               
               98-238, gnl|oryCun1|scaffold_209455 (51043-50877)
               

               
               98-238, gnl|panTro1|chrUn_random (58201025-58200859)
               

               
               98-238, gnl|rheMac2|chr11 (8995968-8996134)
               

               
               98-238, gnl|rn3|chr4 (158797573-158797417)
               

               
               98-238, gnl|tetNig1|chr16 (8119761-8119601)
               

               
               98-238, gnl|xenTro1|scaffold_337 (597189-597355)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	98-238, gnl\|bosTau2\|chr5 (59612335-59612195)
	98-238, gnl\|canFam2\|chr27 (39881802-39881636)
	98-238, gnl\|danRer3\|chr15 (24928978-24929144)
	98-238, gnl\|dasNov1\|scaffold_17983 (40547-40381)
	98-238, gnl\|echTel1\|scaffold_288753 (55683-55517)
	98-238, gnl\|fr1\|chrUn (125215677-125215842)
	98-238, gnl\|galGal2\|chr1 (68378041-68377875)
	98-238, gnl\|hg17\|chr12 (8901802-8901968)
	98-238, gnl\|Hg17\|chr12 (8901808-8901948)
	98-238, gnl\|loxAfr1\|scaffold_10616 (16557-16391)
	98-238, gnl\|mm7\|chr6 (122409096-122408929)
	98-238, gnl\|Mm7\|chr6 (122409088-122408947)
	98-238, gnl\|oryCun1\|scaffold_209455 (51043-50877)
	98-238, gnl\|panTro1\|chrUn_random (58201025-58200859)
	98-238, gnl\|rheMac2\|chr11 (8995968-8996134)
	98-238, gnl\|rn3\|chr4 (158797573-158797417)
	98-238, gnl\|tetNig1\|chr16 (8119761-8119601)
	98-238, gnl\|xenTro1\|scaffold_337 (597189-597355)