Non-Coding RNA Search

rton1218b_l7.y1

Sequence:


               
               GGAAAAACATGCATCATGCATTCATATCCAGTCTGCGTATAATCTCAGGAGTCTCACACC
TGGCACATCTGTGGATCTGTCCAGTGCTCCCATGGGTTTCAGTTCAGGAATGTGCTTCCA
AATTGAGTCCTGCGACCTGAGGTATATCACTCCCTCGCTCTGGACCTCCGTTTCTTTTTA
TGTAAGATGAGGAATCATGAGAAGGAGGTGAAGAACATAAAGAAACGAACAACTTTGCAA
GTCATTCGGTTTGAGTATTTTACATACCACACATATTCCATCCTGTTAGTGGGTAGAATG
ATCTCCATTTTGAAAACAAGAAAATAGAGACTCACTGCAAGAAACTTAGCAAAATAGACA
CATGAGTAATCGAAGGAGCTAGATTCTACCCAGACCTGTTCAACTCCAAATCCTGGGCTC
CTCCCTGCAACTGTGCTGCCTTCCAGGTGTACTATTATTAATGTCTGCCTGCCCAGTCCT
GGCATGATTAATGCACTAATTTCTGGACAGCACTTATGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAAACATGCATCATGCATTCATATCCAGTCTGCGTATAATCTCAGGAGTCTCACACC
TGGCACATCTGTGGATCTGTCCAGTGCTCCCATGGGTTTCAGTTCAGGAATGTGCTTCCA
AATTGAGTCCTGCGACCTGAGGTATATCACTCCCTCGCTCTGGACCTCCGTTTCTTTTTA
TGTAAGATGAGGAATCATGAGAAGGAGGTGAAGAACATAAAGAAACGAACAACTTTGCAA
GTCATTCGGTTTGAGTATTTTACATACCACACATATTCCATCCTGTTAGTGGGTAGAATG
ATCTCCATTTTGAAAACAAGAAAATAGAGACTCACTGCAAGAAACTTAGCAAAATAGACA
CATGAGTAATCGAAGGAGCTAGATTCTACCCAGACCTGTTCAACTCCAAATCCTGGGCTC
CTCCCTGCAACTGTGCTGCCTTCCAGGTGTACTATTATTAATGTCTGCCTGCCCAGTCCT
GGCATGATTAATGCACTAATTTCTGGACAGCACTTATGCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               216-406, - strand, RNAz p=0.991005

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               216-406, - strand, RNAz p=0.991005

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-496, gnl|bosTau2|chr26 (13202038-13201538)
               

               
               2-496, gnl|Hg17|chr10 (102330211-102330722)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-496, gnl|bosTau2|chr26 (13202038-13201538)
               

               
               2-496, gnl|Hg17|chr10 (102330211-102330722)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	2-496, gnl\|bosTau2\|chr26 (13202038-13201538)
	2-496, gnl\|Hg17\|chr10 (102330211-102330722)