Non-Coding RNA Search

rton1223b_j20.y1

Sequence:


               
               AAGACCTCTTCCTTGGAGCCTTTTCTGTGTGTTCCTACCTTCAGTGAGTCTGGGCTGCCT
TCACAGAACTCACTGCACCATCCATTGGCAACTGCCTTGAAACATCTCTTGAATTTTCAT
TTTGCTTTTCAGGTGTGTTTGTCTTACCTGCCCAACTAGGTTATAAATTCCCATTTGAGT
GGAATAAGAGTATCTCTAAAGCCCCATGTTTCTCCTGTGGCAGGCAGCTGCTCAGCAAAG
CTTATGGGTTGGCAACTTGAGCCATGGTCTTTGTCTTGATGAGCAGCTCCTTACTGAGAC
AAGAGGAAACCATGTAACAATAAAGACGATGATACCCTCACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACCTCTTCCTTGGAGCCTTTTCTGTGTGTTCCTACCTTCAGTGAGTCTGGGCTGCCT
TCACAGAACTCACTGCACCATCCATTGGCAACTGCCTTGAAACATCTCTTGAATTTTCAT
TTTGCTTTTCAGGTGTGTTTGTCTTACCTGCCCAACTAGGTTATAAATTCCCATTTGAGT
GGAATAAGAGTATCTCTAAAGCCCCATGTTTCTCCTGTGGCAGGCAGCTGCTCAGCAAAG
CTTATGGGTTGGCAACTTGAGCCATGGTCTTTGTCTTGATGAGCAGCTCCTTACTGAGAC
AAGAGGAAACCATGTAACAATAAAGACGATGATACCCTCACAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               184-301, - strand, RNAz p=0.917571

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-301, - strand, RNAz p=0.917571

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-342, gnl|bosTau2|chr3 (14024795-14025146)
               

               
               1-342, gnl|canFam2|chr17 (64652904-64653302)
               

               
               1-342, gnl|echTel1|scaffold_321784 (2345-2721)
               

               
               1-342, gnl|hg17|chr1 (149547131-149547530)
               

               
               1-342, gnl|Hg17|chr1 (149547257-149547603)
               

               
               1-342, gnl|loxAfr1|scaffold_14997 (4827-4425)
               

               
               1-342, gnl|mm7|chr3 (92929580-92929185)
               

               
               1-342, gnl|Mm7|chr3 (92929464-92929111)
               

               
               1-342, gnl|oryCun1|scaffold_211435 (54157-54535)
               

               
               1-342, gnl|panTro1|chr1 (131326044-131326443)
               

               
               1-342, gnl|rheMac2|chr1 (131274632-131274961)
               

               
               1-342, gnl|rn3|chr2 (185789941-185789573)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-342, gnl|bosTau2|chr3 (14024795-14025146)
               

               
               1-342, gnl|canFam2|chr17 (64652904-64653302)
               

               
               1-342, gnl|echTel1|scaffold_321784 (2345-2721)
               

               
               1-342, gnl|hg17|chr1 (149547131-149547530)
               

               
               1-342, gnl|Hg17|chr1 (149547257-149547603)
               

               
               1-342, gnl|loxAfr1|scaffold_14997 (4827-4425)
               

               
               1-342, gnl|mm7|chr3 (92929580-92929185)
               

               
               1-342, gnl|Mm7|chr3 (92929464-92929111)
               

               
               1-342, gnl|oryCun1|scaffold_211435 (54157-54535)
               

               
               1-342, gnl|panTro1|chr1 (131326044-131326443)
               

               
               1-342, gnl|rheMac2|chr1 (131274632-131274961)
               

               
               1-342, gnl|rn3|chr2 (185789941-185789573)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	1-342, gnl\|bosTau2\|chr3 (14024795-14025146)
	1-342, gnl\|canFam2\|chr17 (64652904-64653302)
	1-342, gnl\|echTel1\|scaffold_321784 (2345-2721)
	1-342, gnl\|hg17\|chr1 (149547131-149547530)
	1-342, gnl\|Hg17\|chr1 (149547257-149547603)
	1-342, gnl\|loxAfr1\|scaffold_14997 (4827-4425)
	1-342, gnl\|mm7\|chr3 (92929580-92929185)
	1-342, gnl\|Mm7\|chr3 (92929464-92929111)
	1-342, gnl\|oryCun1\|scaffold_211435 (54157-54535)
	1-342, gnl\|panTro1\|chr1 (131326044-131326443)
	1-342, gnl\|rheMac2\|chr1 (131274632-131274961)
	1-342, gnl\|rn3\|chr2 (185789941-185789573)